BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0002.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310651|ref|YP_003774743.1| thiosulfate reductase cytochrom...   177   8e-46
gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...   148   4e-37

>gi|300310651|ref|YP_003774743.1| thiosulfate reductase cytochrome
           subunit B [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  177 bits (449), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 113/165 (68%), Gaps = 1/165 (0%)

Query: 11  TTSPTIHPLWLRVTHWTNALAVVLMILSGWRIYNASPIFPFSFPKEWTLGGWLGGALQWH 70
           +  P +HPL +R+ HW NA A+  MI SGW IYNASP+FPF F    TLGGWLGG++ WH
Sbjct: 2   SRPPVLHPLAVRIAHWLNAFAIACMISSGWGIYNASPLFPFKFASWMTLGGWLGGSIAWH 61

Query: 71  FAAMWLLAINGVIYLALNLLSGRARRKFLPLRPAEVFHDFVQALKGKLQHASLDHYNAVQ 130
           FAAMWLL  NG+ YL    LSG  RR  LP+R  EV+ D  QAL+ KL H     YNAVQ
Sbjct: 62  FAAMWLLVANGLFYLLYGALSGHFRRHLLPVRAGEVWRDAGQALRLKLPHQP-GVYNAVQ 120

Query: 131 KLAYLSVIADLVLIVVSGLAIWKSVQLPLLRDMMGGYDNARIVHF 175
           KL Y +V+   +L+V+SGLA+WK VQL  L D+ GG+D AR VHF
Sbjct: 121 KLLYWAVMLLGILVVLSGLALWKPVQLDWLADLFGGFDFARKVHF 165


>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  148 bits (374), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 82/101 (81%)

Query: 183 GVPFAGFLKHIGADLSAKYIAFRCADDYFTSIDMATALHPQTQLTLTYDGEILPPKYGFP 242
           GVP   FL+ +GADL+A+Y+ F+CAD Y++S+DM TALHPQT L L +  E LP +YG+P
Sbjct: 157 GVPLRLFLQAVGADLTARYVGFKCADRYYSSLDMPTALHPQTILALDFGKEALPTQYGYP 216

Query: 243 MKLRMPTKLGYKNPKHIASIEVTNTYPGGYWEDQGYNWFGG 283
           +K+R+PTKLG+KNPKH+ +I V+N  PGGYWEDQGYNWF G
Sbjct: 217 LKVRVPTKLGFKNPKHVVAIFVSNQNPGGYWEDQGYNWFSG 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 968,688
Number of extensions: 38906
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)