BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0003.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313078|ref|YP_003777170.1| NADP-dependent oxidoreductase [...   348   4e-97
gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H...    62   7e-11

>gi|300313078|ref|YP_003777170.1| NADP-dependent oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  348 bits (892), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 187/291 (64%), Positives = 220/291 (75%), Gaps = 26/291 (8%)

Query: 5   NPYMRGRMSDAPSYAAHVEIDAVMTGGTVSRVVASQHPDYREGDLVMAYTGWQDYALSDG 64
           +PYMRGRMSDAPSYA  VEI  VMTGG VSRV AS+HP+++EGDLVMAYTGWQ+YA+SDG
Sbjct: 52  DPYMRGRMSDAPSYAPPVEIGGVMTGGVVSRVEASRHPEFKEGDLVMAYTGWQEYAVSDG 111

Query: 65  TGATKLDKNMPRPSYALGLFGMPGFTAYAGLLDIGQPKEGETVVVAAATGAVGSVVGQIA 124
           TG  KL      PS+ALG+ GMPG+TAYAGL+DIGQP+ GETVVVAAATGAVGS+VGQIA
Sbjct: 112 TGVNKLPAGFAHPSHALGVLGMPGYTAYAGLIDIGQPRPGETVVVAAATGAVGSLVGQIA 171

Query: 125 RLKGCRVVGIAGGAEKCRYAVEELGFDACIDHRGDDLPQQLRDACPKGIDVYFENVGSGV 184
           +L+GC VVGIAGGA+KC  AV+ELGFDACIDHR  D P+QL+ ACP+GIDVYFENVG  V
Sbjct: 172 KLRGCHVVGIAGGAQKCEAAVKELGFDACIDHRAADFPEQLKAACPRGIDVYFENVGGAV 231

Query: 185 AP---------------------NAALLST----LPRNLLTKRIRMQGFIIFDYY-QRAG 218
                                  N   L+T    + R  LT+R+R+QGFIIFDYY  R  
Sbjct: 232 LDAVFPLLNIHARVPVCGLIAHYNGGTLATDSAAILRRTLTQRMRVQGFIIFDYYVNRPD 291

Query: 219 YFAEFFKEMSAWVAAGKIKYREDVVQGLENAPQAFMGLLEGKNFGKLVVQI 269
             A F +E+  W+  GK+ YREDVVQGLENAP+AFMGLL+GKNFGKLVV++
Sbjct: 292 LHAAFQQEVGNWLKQGKLHYREDVVQGLENAPEAFMGLLQGKNFGKLVVKL 342


>gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 9/149 (6%)

Query: 44  YREGDLVMAYTGWQDYALSDGTGATKLDKNMPRPS--YALGLFGMPG--FTAYAGLLDIG 99
           ++ GDLV A      YA      A  L + +P P    AL    +P   FT ++ + D G
Sbjct: 79  FKLGDLVCALVQGGGYA---EFCAAPLAQCLPVPKGLSALEAAALPENYFTVWSNVFDRG 135

Query: 100 QPKEGETVVVAAATGAVGSVVGQIARLKGCRVVGIAGGAEKCRYAVEELGFDACIDHRGD 159
           Q    ET++V   +  +G    QIAR  G RV   AG AEKCR A EELG +  I+++ +
Sbjct: 136 QLSGEETLLVQGGSSGIGVTAIQIARALGHRVFATAGSAEKCR-ACEELGAERAINYKTE 194

Query: 160 DLPQQLRDAC-PKGIDVYFENVGSGVAPN 187
           D    +++    +G+DV  + VG    P 
Sbjct: 195 DFEAVVKELTGGRGVDVILDMVGGDYLPR 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 898,803
Number of extensions: 37205
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)