BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0009.p (566 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 742 0.0 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 169 6e-43 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 152 8e-38 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 129 8e-31 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 123 5e-29 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/451 (86%), Positives = 418/451 (92%) Query: 35 LLSHNMKRLAALHWPYKKRLAIAFLAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLV 94 +LS+NMKRLAALHWPYKKRLA+AF+AMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLV Sbjct: 1 MLSNNMKRLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLV 60 Query: 95 PVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPVNFYATNTVGKVINS 154 PVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLP++FYATNTVGKVINS Sbjct: 61 PVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINS 120 Query: 155 MMFEVQQIIDMVTKVFTSIVRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTIVVRTTGK 214 MMFEVQQIIDMVTKVFTSI+RSALTVLGLLAWLLYLNWVLTIVTLVLLPLVT+VVRTTGK Sbjct: 121 MMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGK 180 Query: 215 RLKKLNRDSLAVNAELTQVIEETTRAQQVIKVFGGHDYEKGRFHERAENLRRYTMRMTTA 274 RLKKLNRDSLAVNAE+TQVIEETTRAQQVIK+FGG DYEK RF+ RAENLR YTMRMT A Sbjct: 181 RLKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAA 240 Query: 275 FSATVPITQLMTACAVAIVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLAEINGP 334 FS+TVPITQLMTA AVA+VIVMALIQSGNGQITVGGFVSF+TAMLMLL PLKQLAEINGP Sbjct: 241 FSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGP 300 Query: 335 LQRGMAAAEEVYILIDKPIERTGGETLSARSTGKLELVNVNFSYPGHSQLALQNINLRVQ 394 LQRGMAAAEEVY LIDK ER GE L+ R+TG+L+ V V F+YPGH QLAL+NINL V+ Sbjct: 301 LQRGMAAAEEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVE 360 Query: 395 PGETIAFVGMSGGGKSTLVSLIPGFYSATGGEILLDGKPIESISLTSLRRQIAMVSQNTV 454 GETIAFVGMSGGGKSTLVSLIPGFYS + GEI LDG+ IE+ISL SLR+QIAMV+QNTV Sbjct: 361 AGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTV 420 Query: 455 LFDDTLAANIAYGDARPDAERVRAXPRRSHL 485 LFDDTLAANIAYGDA PD RV A +HL Sbjct: 421 LFDDTLAANIAYGDANPDPARVEAAVEAAHL 451 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 134/436 (30%), Positives = 219/436 (50%), Gaps = 15/436 (3%) Query: 49 PYKKRLAIAFLAMIVTAATEPVVPYIFQVLLDKGFVG---KPAFSLWLVPVAVIGIFFIR 105 PYKK+ +A LA++V AA VPY F+ ++D GF K A + L +A+ G+ I Sbjct: 45 PYKKQFLLAGLALVVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALFGVACIL 104 Query: 106 GIATFTSSYMMTWVSTRILNELRRQMFARMLDLPVNFYATNTVGKVINSMMFEVQQIIDM 165 G+AT YM++W+ R+ +LR ++A ++ F+ T G+V++ + + I + Sbjct: 105 GVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTL 164 Query: 166 VTKVFTSIVRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTIVVRTTGKRLKKLNRDSLA 225 V + +R+AL +G ++ L + + LT + +V+L V + + G+R++KL+R S Sbjct: 165 VGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQD 224 Query: 226 VNAELTQVIEETTRAQQVIKVFGGHDYEKGRFHERAENLRRYTMRMTTAFSATVPITQLM 285 A+ + + E A ++ F + E RF + E M A S + L+ Sbjct: 225 RVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILL 284 Query: 286 TACAVAIVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLAEINGPLQRGMAAAEEV 345 A+ V+ + G ++ G F+ ++ L L+E+ G QR A E + Sbjct: 285 VFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERL 344 Query: 346 YILI--DKPIERT-GGETLSARST--GKLELVNVNFSY---PGHSQLALQNINLRVQPGE 397 L+ P++ E L R+ L + V+F Y PGH +L ++L VQPGE Sbjct: 345 LDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHP--SLTQLSLTVQPGE 402 Query: 398 TIAFVGMSGGGKSTLVSLIPGFYSATGGEILLDGKPIESISLTSLRRQIAMVSQNTVLFD 457 T+A VG SG GK+TL L+ FY G+ILLDG I + L +LR I +V Q+TV+F Sbjct: 403 TVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFS 462 Query: 458 DTLAANIAYGDARPDA 473 NI +G RP+A Sbjct: 463 ANAMENIRFG--RPEA 476 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 152 bits (384), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 122/446 (27%), Positives = 209/446 (46%), Gaps = 24/446 (5%) Query: 42 RLAALHWPYKKRLAIAFLAMIVTAATEPVVPYIFQVLLDKGFV----GKPA----FSLWL 93 RL+ PYK L + FL + + A V PY+ L+D + G P +L+L Sbjct: 170 RLSRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYL 229 Query: 94 VPVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPVNFYATNTVGKVIN 153 ++G + + +Y++ VS RI +LR ++ +L L ++ G ++ Sbjct: 230 S--GLLGAAVLAWGLGWARTYILALVSERIGADLRTTTYSHLLRLSQEYFGGKRTGDLMA 287 Query: 154 SMMFEVQQIIDMVTKVFTSIVRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTIVVRTTG 213 + E +I ++ L ++ A L+ +N L +VTL+ LP + ++ Sbjct: 288 RIGSETDRICVFLSLHLLDFAIDVLMIIMTAAILISINPWLALVTLLPLPFIAWMIHVVR 347 Query: 214 KRLK----KLNRDSLAVNAELTQVIEETTRAQQVIKVFGGHDYEKGRFHERAENLRRYTM 269 RL+ K++R + +E+T V+ +T +V+K F E RF E + Sbjct: 348 DRLRHGFEKIDR----IWSEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVND 403 Query: 270 RMTTAFSATVPITQLMTACAVAIVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLA 329 R+ +S P +T + +V V + Q + QITVG +FL + L ++ Sbjct: 404 RVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMS 463 Query: 330 EINGPLQRGMAAAEEVYILID--KPIERTGGETLSARSTGKLELVNVNFSYPGHSQLALQ 387 I Q+ A A+ ++ ++D + + G +E+ N+ F Y + ++ Sbjct: 464 RIVSVTQKAAAGAKRIFDILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRYGNRA--VIR 521 Query: 388 NINLRVQPGETIAFVGMSGGGKSTLVSLIPGFYSATGGEILLDGKPIESISLTSLRRQIA 447 N++L + PGE I VG SG GKST+V+LI FY + G I +DG I S+ ++ RR I Sbjct: 522 NMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIG 581 Query: 448 MVSQNTVLFDDTLAANIAYGDARPDA 473 +V Q LF T+A NIAYG +P+A Sbjct: 582 LVLQEPFLFFGTIAENIAYG--KPEA 605 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 129 bits (323), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 125/455 (27%), Positives = 216/455 (47%), Gaps = 27/455 (5%) Query: 48 WPYKKRLAIAFLAMIVTAATEPV-VPYIFQVLLDKGFVG--KPAFSLWLVPVAVIGIFFI 104 W YK R+ +A LA +V A V VP + + L+D + P L L ++ + Sbjct: 33 WTYKWRVLLA-LAFLVGAKLANVGVPLVLKRLVDAMTITPTHPQALLVLPLGLLVAYGAL 91 Query: 105 R-GIATFTS--SYMMTWVSTRILNELRRQMFARMLDLPVNFYATNTVGKVINSMMFEVQQ 161 R A FT M V+ R + + Q+F + L + F+ G + + + Sbjct: 92 RLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRG 151 Query: 162 IIDMVTKVFTSIVRSALTVLGLLAWLL--YLNW--VLTIVTLVLLPLVTIVV---RTTGK 214 + +V+ SI+ + + + +LA+L+ Y W V+T LV L TI V RT + Sbjct: 152 VSSLVSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTHFR 211 Query: 215 RLKKLNRDSLAVNAELTQVIEETTRAQQVIKVFGGHDYEKGRFHERAENLRRYTMRMTTA 274 R DS A + ++ T +K FG ++E R+ E + R ++ ++ Sbjct: 212 RTMN-ELDSHANTRAIDSLLNYET-----VKYFGNEEFEARRYDEGLQRYERAAVKSQSS 265 Query: 275 FSATVPITQLMTACAVAIVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLAEINGP 334 S + A AV +++ A + +G +T+G V M+ L PL L + Sbjct: 266 LSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYRE 325 Query: 335 LQRGMAAAEEVYILIDKPIERTGGETLSAR----STGKLELVNVNFSYPGHSQLALQNIN 390 +++ +A E ++ L+++ R ++ A+ L +V+FSY + Q+ L +++ Sbjct: 326 IKQSLADMERLFSLLEE--HREVADSADAKPLKTQGANLHFDHVDFSYERNRQI-LFDVD 382 Query: 391 LRVQPGETIAFVGMSGGGKSTLVSLIPGFYSATGGEILLDGKPIESISLTSLRRQIAMVS 450 VQ G T A VG SG GKSTL L+ FY G I +DG+ + +++ SLR+ I +V Sbjct: 383 FTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVP 442 Query: 451 QNTVLFDDTLAANIAYGDARPDAERVRAXPRRSHL 485 Q+TVLF+DT+ NIAYG E++ A + +++ Sbjct: 443 QDTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYI 477 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 106/431 (24%), Positives = 198/431 (45%), Gaps = 9/431 (2%) Query: 50 YKKRLAIAFLAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIAT 109 Y+K LA L +V + P FQV++DK V +L ++ V +I + T Sbjct: 159 YRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLT 218 Query: 110 FTSSYMMTWVSTRILNELRRQMFARMLDLPVNFYATNTVGKVINSMMFEVQQIIDMVTKV 169 + + S++I EL ++F+ +L LP++++ G I + + E++ I +T Sbjct: 219 GIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGDSI-ARVRELENIRSFLTGN 277 Query: 170 FTSIVRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTIVVRTTGKRLKKLNRDSLAVNAE 229 ++V + L +L+ + L+++ L +P+ ++ L++ D +AE Sbjct: 278 AMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAE 337 Query: 230 LTQVIEETTRAQQVIKVFGGHDYEKGRFHERAENLRRYTMRMTT----AFSATVPITQLM 285 + ET +K + ++ ++ + T A A +++L+ Sbjct: 338 NQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLV 397 Query: 286 TACAVAIVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLAEINGPLQRGMAAAEEV 345 T V I+ + AL+ N +++VG V+F + +P+ +LA++ Q+ + + Sbjct: 398 T---VGIMWLGALLVVKN-EMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGISMSRL 453 Query: 346 YILIDKPIERTGGETLSARSTGKLELVNVNFSYPGHSQLALQNINLRVQPGETIAFVGMS 405 ++D E G T R G + V+F Y + ++ ++L+++PGE I VG S Sbjct: 454 ADVLDARTEVAGNRTRLPRVNGAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRS 513 Query: 406 GGGKSTLVSLIPGFYSATGGEILLDGKPIESISLTSLRRQIAMVSQNTVLFDDTLAANIA 465 G GKSTL L+ Y G I +DG+ I I SLR+QI +V Q LF ++ NIA Sbjct: 514 GSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIA 573 Query: 466 YGDARPDAERV 476 D E++ Sbjct: 574 LADPSTPIEQI 584 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,349,610 Number of extensions: 49425 Number of successful extensions: 410 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 417 Number of HSP's successfully gapped: 18 Length of query: 566 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 476 Effective length of database: 1,193,720 Effective search space: 568210720 Effective search space used: 568210720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)