BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0008.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS heptosyltransfe...   577   e-166

>gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS
           heptosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 367

 Score =  577 bits (1487), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 280/369 (75%), Positives = 314/369 (85%), Gaps = 4/369 (1%)

Query: 4   TPQTLIPPALLKKSDKILFIAHLALGDFTYLQNFFQAFARANPHLKVHLWVDEVRRTSDP 63
           T  TLIP  LLKKSDKILFIAHLALGDFTYLQNFF+AFA  +PHLKVHLWVDEVRRT+D 
Sbjct: 3   TQATLIPADLLKKSDKILFIAHLALGDFTYLQNFFKAFAAQHPHLKVHLWVDEVRRTADS 62

Query: 64  AQWKHLGKYSLYDWVAACPFFDKIYTRTYSPALYQESIEEAQREHYPIVVSLATLRPHLY 123
           +QW HL KY+LYDW AACPFF K+YTRTYSPALY++SIEEA+ EHYPIVVSLATLRPHLY
Sbjct: 63  SQWPHLQKYALYDWTAACPFFAKVYTRTYSPALYRDSIEEARAEHYPIVVSLATLRPHLY 122

Query: 124 AGLARSISPDGLVIGMKKRVKFYQPHHQLAYRKLNAAIPPYSVDRANPQHISDVYAHWFH 183
           AGLAR ISP+G V+GMKK+V   QPHH LAYRKL+A +PPY   +    HISDVYAHWF 
Sbjct: 123 AGLAREISPEGWVVGMKKKVSLLQPHHLLAYRKLDAVMPPYRSSQPE-HHISDVYAHWFR 181

Query: 184 QLSGLEVGAAERFPFVDIPQQWRDYAQEKLTSWNAKAASGQSGKLVFINPYAKTKKRCWP 243
           QLSGLEV    RFPFVDIP QWR YAQ++L +W     + ++GKLVFINPYAKT+KRCWP
Sbjct: 182 QLSGLEVTGQARFPFVDIPPQWRQYAQDQLAAWQ---FAPRTGKLVFINPYAKTRKRCWP 238

Query: 244 LEHVAELIIGMKKLDAWRDSSFIVNAVPQELEHARAIISGYQLERTELFSAEENFFQLPA 303
           LEHVA+LI  M++ + W+D+  IVNAVPQEL HAR +I  Y L+ TELFSAEENFFQLPA
Sbjct: 239 LEHVADLIQAMQQREGWQDARVIVNAVPQELAHAREVIGRYGLQGTELFSAEENFFQLPA 298

Query: 304 ILERCDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPIDRANSTVITAPSRRDWVKAV 363
           +L  CDLIISVETAVMHLANAVHVPVIALMRQKNPEWVP+DRA+STVITAP RRDWVKAV
Sbjct: 299 MLAACDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPVDRAHSTVITAPGRRDWVKAV 358

Query: 364 SVEQVLKAI 372
           SVEQV+KAI
Sbjct: 359 SVEQVMKAI 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,207,548
Number of extensions: 49811
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)