BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0007.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   257   5e-70
gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...   160   1e-40

>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  257 bits (657), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 122/142 (85%), Positives = 129/142 (90%)

Query: 3   SNGKPSFHIAFCVDNNYFRAMGGTISSIIDNNPGQHFTFHVLAFEVSEDHQRRLRQLEDM 62
            NGKPSFHIAFCVDNNYFRAMGGTI+SI+ NNP QHFTFHVLAFEVSEDHQRRL+QLE M
Sbjct: 14  GNGKPSFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVSEDHQRRLKQLEAM 73

Query: 63  YPVSTQLHLLDLNSFTQFSHFIGHSHYSLSIFTRLVIPTVLKGQTDRVLYLDADILCVNK 122
           Y V T+LHLLDLN FTQFSHF+GHSHYSLSIFTRLVIPTVL   TDRVLYLDADILC N+
Sbjct: 74  YRVKTELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDRVLYLDADILCFNR 133

Query: 123 LDEMVDMDISGDIAVVVPDAPV 144
           LD +VDMDIS DIAVVVPDAPV
Sbjct: 134 LDALVDMDISQDIAVVVPDAPV 155


>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score =  160 bits (404), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 102/148 (68%), Gaps = 3/148 (2%)

Query: 8   SFHIAFCVDNNYFRAMGGTISSIIDNNPGQHFTFHVLAFEVSEDHQRRLRQLEDMYPVST 67
           ++HIAFCVDN+YFRAMG  ++S++ NNPG+ F FHV AF +S+D+ RR+R +E+   +  
Sbjct: 21  AWHIAFCVDNHYFRAMGAMLASMVANNPGRRFVFHVFAFAISDDNARRMRSIEENPNIKV 80

Query: 68  QLHLLDLNSFTQFSHFIGHSHYSLSIFTRLVIPTVLKGQTDRVLYLDADILCVNKLDEMV 127
             HL+   +F +F   I  S+YSLS FTRL++P  LK QTDRVLY+DAD+LCV  L+E++
Sbjct: 81  VPHLVAQETFAEFGEMIAKSYYSLSTFTRLIVPATLKDQTDRVLYVDADMLCVGSLEELM 140

Query: 128 DMDISGDIAVVVPDAPVXNAAAPGRRAG 155
            MD+ G  A+VV D       AP  R G
Sbjct: 141 GMDLDGTNALVVDDV---GWEAPTGRDG 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 535,478
Number of extensions: 16595
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)