BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0006.p
         (78 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   136   4e-34
gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...    85   1e-18

>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  136 bits (342), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 69/78 (88%)

Query: 1   VFVHFAGAVKPWTDWSGHDARHLFRKYLSLTPWADMPLDPEPKNTKEMRMHSRFMYRQGR 60
           +FVHFAGAVKPW  WS H+A  LFR+YL ++PWADM LD EP+NTKE+RMHSRFMYRQGR
Sbjct: 251 IFVHFAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRMHSRFMYRQGR 310

Query: 61  PLESLKWYIRYLRKRAAK 78
           PLESLKWY+RYL KRAAK
Sbjct: 311 PLESLKWYLRYLGKRAAK 328


>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score = 85.1 bits (209), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query: 2   FVHFAGAVKPWTDWSGHDARHLFRKYLSLTPWADMPLDPEPKNTKEMRMHSRFMYRQGRP 61
            +HFAG VKPW DWSGH AR L+ +Y +L+ W+D+PLD  P N KEMR+++RF+ ++G  
Sbjct: 258 IIHFAGLVKPWIDWSGHAARELYLRYHTLSAWSDLPLDAAPLNHKEMRVYARFLIKRGDY 317

Query: 62  LESLKWYIRYL 72
              L W  R+L
Sbjct: 318 ACGLYWNARFL 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 256,695
Number of extensions: 8682
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 2
Length of query: 78
Length of database: 1,619,870
Length adjustment: 49
Effective length of query: 29
Effective length of database: 1,387,855
Effective search space: 40247795
Effective search space used: 40247795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)