BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0004.p
         (422 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase...    86   7e-18
gi|300312860|ref|YP_003776952.1| Lipid A core - O-antigen ligase...    67   3e-12

>gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 7/244 (2%)

Query: 143 TDFIPIIIFAELVLLLGVFSLFSIAW--DKRHSWLLMGLKIVAAGAGVYAAYLSQSRGTW 200
           T +   I + ++  ++G+  L  I W   +R +   + L IV    G+  +  + SRG+W
Sbjct: 131 TGYTNAIQYGDISFIIGILCLTGITWAMQQRAARAWVALLIVGGVMGLMGSLFTGSRGSW 190

Query: 201 VTI-FVFAILGSMVVRHIPRVYKIGAAIVFAVVVAGVFQ--HSSILKERLAVAEKDIQLY 257
           V +     IL     R IP  Y  G+       +A VF    S+  + R+++A  +   Y
Sbjct: 191 VALPICLLILCVYYSRSIPARYVWGSLAALVAAIAIVFTVMPSTDFRARISLAFSEASTY 250

Query: 258 TTGTDRDTSLGIRFQLWHGSWILFKEHPLFGVGVEQY-QGALQELAERKIISPFSASLPH 316
               D D+S+G R ++W    +   E P+ G+G   + Q    ++   KI +  S +  H
Sbjct: 251 MQKKDADSSIGTRMEMWRAGAMAVAEAPVLGMGKAGFVQWETGQIEAGKINALMSGN-NH 309

Query: 317 SHNEILFMMARLGVLGLLAILAVYFVPLYYFIRDVRHADMEVRCVAGMGMALSLGFFTLG 376
            +NE L  + + GV GLL +LA+YFVPL  FI  ++ A  + +  A  G+ L + +   G
Sbjct: 310 VYNEWLDALVKRGVPGLLVLLALYFVPLRLFIARLKSAPEQAKPYALGGVLLIVNYIGFG 369

Query: 377 LVDV 380
              V
Sbjct: 370 FSQV 373


>gi|300312860|ref|YP_003776952.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 96/198 (48%), Gaps = 5/198 (2%)

Query: 187 GVYAAYLSQSRGTWVTIFVFAILGS-MVVR--HIPRVYKIGAAIVFAVVVAGVFQHSSIL 243
           G+ A+ LS SRG+W+ + V A L + +++R  +   V ++GA  +  +V   +   S  L
Sbjct: 197 GLTASILSGSRGSWLALPVCATLAAWLLLRAGYARLVLQLGAGSLAMLVCLALLPQSP-L 255

Query: 244 KERLAVAEKDIQLYTTGTDRDTSLGIRFQLWHGSWILFKEHPLFGVGVEQYQGALQELAE 303
             RL +A  +   Y    D D+S+G R ++W     L  +H L G G +    A  E+  
Sbjct: 256 SARLRLALAETNDYVQRADADSSVGTRLEMWRIGMQLAPQHLLVGWGKQGMIDAKHEMVS 315

Query: 304 RKIISPFSASLPHSHNEILFMMARLGVLGLLAILAVYFVPLYYFIRDVR-HADMEVRCVA 362
           +   SP      H HNE L  + + G+ GL A+L +Y +PL+ F R  R  A  E R  A
Sbjct: 316 QGQASPSVDEHTHLHNEYLDALVKRGIPGLAALLVLYLLPLWLFHRQRRLAAGYEARLAA 375

Query: 363 GMGMALSLGFFTLGLVDV 380
             G+ + L +   GL   
Sbjct: 376 SAGVMMVLSYLAFGLTQA 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,081,880
Number of extensions: 37539
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,203,190
Effective search space: 401865460
Effective search space used: 401865460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 132 (55.5 bits)