BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0003.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   276   1e-75
gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...   241   6e-65

>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  276 bits (707), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/302 (46%), Positives = 192/302 (63%), Gaps = 4/302 (1%)

Query: 1   VDSSYFRGMGVAIASVIKNNPAIRFVFHAFAFSVSDDSRRRIVQLEAQYAIEIRIHVLDP 60
           VD++YFR MG  IAS++ NNP   F FH  AF VS+D +RR+ QLEA Y ++  +H+LD 
Sbjct: 26  VDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVSEDHQRRLKQLEAMYRVKTELHLLDL 85

Query: 61  HVLDEFRNFPCFAQHHLGTFIRLLIPDLLQGVAKRVLYLDADLLCMGKMDELLSMDIDDC 120
           +   +F +F   + + L  F RL+IP +L  V  RVLYLDAD+LC  ++D L+ MDI   
Sbjct: 86  NDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDRVLYLDADILCFNRLDALVDMDISQD 145

Query: 121 IAAAVHDQIETTAKTQIVALGLPVQEYFNAGVMYINVDNWIANNTQVRALTIL--STQEL 178
           IA  V D    T + ++ AL L  +EYFN GV++IN+  W+A +   + L  L  S  ++
Sbjct: 146 IAVVVPDA-PVTLQRRVAALELAHKEYFNGGVIFINIPKWLAEDITPKTLDALLNSKTDM 204

Query: 179 VFADQDALNIALNGRIKFIGDKWNYRYHLVDFLSKGKSKLEVTAPVVFMHFTGPVKPWHD 238
            F DQDALNI LNGR +++  KWNY Y L+  L+  K  L+     +F+HF G VKPW  
Sbjct: 205 RFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVNKFALKPVGKAIFVHFAGAVKPWAA 264

Query: 239 WCLHEAKPIFIGYQNLSSWADMPLDQ-PRSTRELKLFSKFLVRQGRTLEGTAWHAKYLWK 297
           W  HEA  +F  Y ++S WADM LDQ PR+T+EL++ S+F+ RQGR LE   W+ +YL K
Sbjct: 265 WSRHEACTLFRRYLDISPWADMALDQEPRNTKELRMHSRFMYRQGRPLESLKWYLRYLGK 324

Query: 298 RA 299
           RA
Sbjct: 325 RA 326


>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score =  241 bits (614), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 182/301 (60%), Gaps = 6/301 (1%)

Query: 1   VDSSYFRGMGVAIASVIKNNPAIRFVFHAFAFSVSDDSRRRIVQLEAQYAIEIRIHVLDP 60
           VD+ YFR MG  +AS++ NNP  RFVFH FAF++SDD+ RR+  +E    I++  H++  
Sbjct: 28  VDNHYFRAMGAMLASMVANNPGRRFVFHVFAFAISDDNARRMRSIEENPNIKVVPHLVAQ 87

Query: 61  HVLDEFRNFPCFAQHHLGTFIRLLIPDLLQGVAKRVLYLDADLLCMGKMDELLSMDIDDC 120
               EF      + + L TF RL++P  L+    RVLY+DAD+LC+G ++EL+ MD+D  
Sbjct: 88  ETFAEFGEMIAKSYYSLSTFTRLIVPATLKDQTDRVLYVDADMLCVGSLEELMGMDLDGT 147

Query: 121 IAAAVHD---QIETTAKTQIVALGLPVQEYFNAGVMYINVDNWIANNTQVRALTILSTQ- 176
            A  V D   +  T    +   LGL    YFNAG++YIN+  W  N     A+  L +  
Sbjct: 148 NALVVDDVGWEAPTGRDGRYSVLGLKHPRYFNAGMLYINIPEWEKNKVSEAAIRALVSNP 207

Query: 177 -ELVFADQDALNIALNGRIKFIGDKWNYRYHLVDFLSKGKSKLEVTAPVVFMHFTGPVKP 235
            +L F DQDALNI L+G+ ++I  KWNY Y ++  L +G+  +        +HF G VKP
Sbjct: 208 DKLTFNDQDALNIVLDGQARYIPVKWNYIYSMIADLKQGRQTMSPVGDARIIHFAGLVKP 267

Query: 236 WHDWCLHEAKPIFIGYQNLSSWADMPLD-QPRSTRELKLFSKFLVRQGRTLEGTAWHAKY 294
           W DW  H A+ +++ Y  LS+W+D+PLD  P + +E++++++FL+++G    G  W+A++
Sbjct: 268 WIDWSGHAARELYLRYHTLSAWSDLPLDAAPLNHKEMRVYARFLIKRGDYACGLYWNARF 327

Query: 295 L 295
           L
Sbjct: 328 L 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 955,913
Number of extensions: 38593
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)