BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0002.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alph...   597   e-172

>gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alpha
            [Herbaspirillum seropedicae SmR1]
          Length = 1152

 Score =  597 bits (1538), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 280/364 (76%), Positives = 325/364 (89%)

Query: 1    MDDTEKIKILVEDSLDVCGLSLLPPDINLSDYRFTPVGEPGKKAVHIRYGLGAVKGSGQS 60
            M+DT+K+KIL+ED++D+C L++LPPDIN SDYRF PVGEPGKKA  IRYGLGAVKG+GQ+
Sbjct: 789  MEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMPVGEPGKKATQIRYGLGAVKGAGQN 848

Query: 61   AIEAIIAARQDGPFKDLFDFAKRVDKKQINRRTVDSLIRAGAFDCFGVDRAILQATVGLA 120
            AIEAI+ AR+ GPFKDLFDFAKRVDKKQINRRT+DSLIRAGAFDCF VDRA+LQA+V LA
Sbjct: 849  AIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFDCFKVDRAVLQASVNLA 908

Query: 121  WENAEQMEASANQVSLFGGDDSDLETPLEYVQVRAWSDKQRLTEEKTALGFYLSGHLFDA 180
            WE+AEQ E SANQVSLFGGDDSDLE PLEYVQV  WSDKQRLTEEK ALGFYLSGHLF A
Sbjct: 909  WESAEQAEKSANQVSLFGGDDSDLEAPLEYVQVPPWSDKQRLTEEKGALGFYLSGHLFSA 968

Query: 181  YEKEVRQFVRTKISSLEPSRDPRSLAGIITGIRVQMTQRGKLLIVSLDDGSGTVDVTVYG 240
            YEKEVR+FVRTKI+SLEPS +PRSLAGIITG+RVQMTQRGKL+I +LDDG+G ++ T+Y 
Sbjct: 969  YEKEVRRFVRTKIASLEPSWEPRSLAGIITGVRVQMTQRGKLVICTLDDGTGVIEATIYN 1028

Query: 241  ELAEPNKAFFKEDELLIVQGKVSEDRFNGGLRISAEKVMDIGAARIQYGQRVVVSLNKGV 300
            EL EP K   KEDELL+V GKVSEDRFNGGLR++A+KVMD+GAARIQYG R+VVS+NK +
Sbjct: 1029 ELFEPFKHLIKEDELLVVSGKVSEDRFNGGLRVAADKVMDLGAARIQYGVRMVVSINKAI 1088

Query: 301  DPAYLRDTLSSYRQPQGLPFVMKYVQSGVGCEVILGDSWRVVPSDGLQSSLKESFGQEAV 360
            DP +LRDTLS++RQ QGLPFVM+Y Q+   CEV+LGD+WR+ PSD LQS+L  SFG+EAV
Sbjct: 1089 DPNHLRDTLSAHRQEQGLPFVMRYQQADAACEVVLGDAWRINPSDSLQSTLVASFGKEAV 1148

Query: 361  VVEY 364
            VVEY
Sbjct: 1149 VVEY 1152


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,102,754
Number of extensions: 45636
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)