BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0022.p
         (135 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p...   100   6e-23
gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p...    63   1e-11

>gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I
           protein [Herbaspirillum seropedicae SmR1]
          Length = 668

 Score =  100 bits (248), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 85/125 (68%)

Query: 1   MKSLFARLQLWKKFALLGIIGLALFGVPTTLYIISAESVIAHKTLEMKGVVPARALLRSM 60
           M  L A L+LW+KFALLG++GL LFGVPTTLY  S E VI  K  E+ GV P R LLRS+
Sbjct: 1   MGQLLANLKLWQKFALLGLLGLVLFGVPTTLYFNSTERVIRFKQQEIAGVEPVRRLLRSV 60

Query: 61  QLMQQHRGMSAVLLGGNATVAAQRQAKAQEVDRALQELQAQLKKSGVRNPAIGQDLASVM 120
           QLMQQHRGMSAV+L G A +A  RQAKA EVD+AL  L   L++ G  +  I     + +
Sbjct: 61  QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALAALAGALEEVGRDDTRIPVLFKNQL 120

Query: 121 AAWNK 125
           AAW K
Sbjct: 121 AAWTK 125


>gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I
          protein [Herbaspirillum seropedicae SmR1]
          Length = 646

 Score = 62.8 bits (151), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 56/99 (56%)

Query: 1  MKSLFARLQLWKKFALLGIIGLALFGVPTTLYIISAESVIAHKTLEMKGVVPARALLRSM 60
          M+SL   L+  +KFAL+G +   LF VPTTL + S    +A    E   V P R LL  +
Sbjct: 1  MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML 60

Query: 61 QLMQQHRGMSAVLLGGNATVAAQRQAKAQEVDRALQELQ 99
          + MQQHRG+SA+ L      AA R  + ++V+  L+ ++
Sbjct: 61 KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVR 99


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 319,599
Number of extensions: 9839
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 135
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,260,010
Effective search space: 74340590
Effective search space used: 74340590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)