BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0021.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310581|ref|YP_003774673.1| glycosyltransferase [Herbaspiri...   311   2e-86
gi|300312063|ref|YP_003776155.1| glycosyltransferase 1 protein [...    64   5e-12

>gi|300310581|ref|YP_003774673.1| glycosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  311 bits (797), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 148/180 (82%), Positives = 156/180 (86%)

Query: 1   LMRWFHGPSKAIMVPTPKMKDALEKNGFRNVALWGRGVDTEHFRPAAEDHACIVRPLFLY 60
           L+RWFHG S+AIMVPTP MK ALE+ GF  V LWGRGVDT HFRPA EDHACI RPLFLY
Sbjct: 125 LLRWFHGRSEAIMVPTPAMKTALEEQGFNKVVLWGRGVDTTHFRPAVEDHACIDRPLFLY 184

Query: 61  VGRVAVEKNIEAFLKLDLPGSKWVIGDGPQREELEQRYPHVRFLGAKGHDELPAYYNCAD 120
           VGRVAVEKNIEAFLKLDLPG+KWV+GDGPQ EEL QRYP VRFLGAKG DELPAYYNCAD
Sbjct: 185 VGRVAVEKNIEAFLKLDLPGTKWVVGDGPQLEELTQRYPEVRFLGAKGQDELPAYYNCAD 244

Query: 121 VFVFPSRTDTFGLVLAEAMACGVPVAAYPVEGPIDVVANGVSGALNDELDVACMDALQRD 180
           VFVFPS+TDTFGLVL EAMACGVPVAAYPVEGPIDVV NGVSG L  +L  AC+ AL  D
Sbjct: 245 VFVFPSKTDTFGLVLLEAMACGVPVAAYPVEGPIDVVDNGVSGILRHDLRQACLQALTLD 304


>gi|300312063|ref|YP_003776155.1| glycosyltransferase 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score = 64.3 bits (155), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 82/183 (44%), Gaps = 15/183 (8%)

Query: 1   LMRWFHGPSKAIMVPTPKMKDALEKNGFR--NVALWGRGVDTEHFRP----AAEDHACIV 54
           ++RW    +  I+     ++D L   G     V     GVD + FRP    A      I 
Sbjct: 158 MIRWAADQAAGIITVCNALRDELIVLGADPDKVVALRNGVDLQLFRPLEREAVRRELEIT 217

Query: 55  RPLFLYVGRVAVEKNIEAFLKL--DLPGSKWVI-GDGPQREELEQRYPH------VRFLG 105
               L VG +A  K  +  +     LP ++ +I G GP++  LE           VRFLG
Sbjct: 218 GFTLLSVGNLAPVKGHDLTIAALPRLPEARLLIAGSGPEQARLEALAAQLGVRERVRFLG 277

Query: 106 AKGHDELPAYYNCADVFVFPSRTDTFGLVLAEAMACGVPVAAYPVEGPIDVVANGVSGAL 165
           A     L  YYN AD+ V  S  + +  VL E+MACG PV A  V G  +VVA+  +G L
Sbjct: 278 ALPQSALCRYYNAADMMVLASAREGWANVLLESMACGTPVVASKVWGTPEVVAHPDAGLL 337

Query: 166 NDE 168
             E
Sbjct: 338 MQE 340


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 668,304
Number of extensions: 28445
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)