BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0019.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310580|ref|YP_003774672.1| hypothetical protein Hsero_1248...   495   e-141

>gi|300310580|ref|YP_003774672.1| hypothetical protein Hsero_1248
           [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  495 bits (1274), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/286 (83%), Positives = 256/286 (89%), Gaps = 10/286 (3%)

Query: 1   MKSRDQFLD-ANGIDATLG---------TKRDPLHFRTIWISDVHLGTPGCQAQRLLEFL 50
           MK R+QF++ A G+ A LG          KRDPL FRTIWISD+HLGT GCQA+RLLEFL
Sbjct: 1   MKPREQFMEKAQGLFADLGPDQDAGDEEAKRDPLRFRTIWISDIHLGTTGCQAERLLEFL 60

Query: 51  RATESDTLYLVGDIIDGWQLKRRWYWEQSHNNVVQTVLKKAKKGTNVVFVPGNHDEVIRQ 110
           RATESDTLYLVGDIIDGWQLKRRWYW+QSHNNVVQTVLKKAKKGTNV+FVPGNHDEVIRQ
Sbjct: 61  RATESDTLYLVGDIIDGWQLKRRWYWDQSHNNVVQTVLKKAKKGTNVIFVPGNHDEVIRQ 120

Query: 111 FIDLDFGGIKIRDELVHTTANGKRMLVIHGDRFDGVIACAKWLAYVGDNLYTMILKFNQW 170
           FIDLDFGGIKIRDELVH TA GKRMLV+HGDRFDGVIACAKWLAYVGD LYTMILKFNQW
Sbjct: 121 FIDLDFGGIKIRDELVHVTAEGKRMLVLHGDRFDGVIACAKWLAYVGDTLYTMILKFNQW 180

Query: 171 FNSWRARAGLPYWSLSQYLKGKVKNAVNYITSFEDALAAEASKKGLDGVICGHIHKPEIR 230
           FNSWRARAGLPYWSLSQYLK KVKNAVNYI+SFEDALA EA KKGLDGVICGHIHK EIR
Sbjct: 181 FNSWRARAGLPYWSLSQYLKSKVKNAVNYISSFEDALADEARKKGLDGVICGHIHKAEIR 240

Query: 231 DINGIKYCNDGDWVESLSALVEDASGELRLVTWGEIMQLKKSSKLA 276
           DI G+ YCNDGDWVESLSALVE+ SG+LRLV+W EIMQLK++ K A
Sbjct: 241 DIGGVTYCNDGDWVESLSALVEEPSGQLRLVSWQEIMQLKRAGKEA 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 915,856
Number of extensions: 36619
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)