BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0005.p
         (148 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313824|ref|YP_003777916.1| GntR family transcription regul...    61   5e-11
gi|300313540|ref|YP_003777632.1| transcription regulator protein...    60   9e-11

>gi|300313824|ref|YP_003777916.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 228

 Score = 60.8 bits (146), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query: 8   IEPALLRHLCEHTRPEHIAQLRAHVAQEAQAREANDRRAIIRLSGEFHIRIADMVENPVM 67
           +E A++R       PE  A+L AH+  E QA   ++ +    L  +FHI +A +V N V+
Sbjct: 90  LESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQVRSTLLSDFHILLARIVGNDVL 149

Query: 68  SKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAIAAAXTSTA 113
           + ++ +LA  + LI +LY S    AC+ +EH   I A  A  T  A
Sbjct: 150 TDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAAARAGDTERA 195


>gi|300313540|ref|YP_003777632.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score = 59.7 bits (143), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%)

Query: 7   LIEPALLRHLCEHTRPEHIAQLRAHVAQEAQAREANDRRAIIRLSGEFHIRIADMVENPV 66
           ++E A+L  L        IA LR  V +E       DR   IRLS +FH+ +A++  N +
Sbjct: 106 ILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNAL 165

Query: 67  MSKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAIAAAXTSTATS 115
           + + +R+L S T L+I   ++P   AC+ DEH  +++A+       A +
Sbjct: 166 LVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKGDIKAAQA 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 333,105
Number of extensions: 11166
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 148
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,255,275
Effective search space: 89124525
Effective search space used: 89124525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)