BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0107.0004.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311419|ref|YP_003775511.1| capsule biosynthesis protein [H...   375   e-105

>gi|300311419|ref|YP_003775511.1| capsule biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 429

 Score =  375 bits (963), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/308 (60%), Positives = 225/308 (73%), Gaps = 1/308 (0%)

Query: 1   MDDFCTIELFADNHWTEAANVSLTGAAAQGVFTPTSSGYGLEYAVAWQNRRDAHALSSGF 60
           M   CT+E+  D  W +A  ++LT A  QG+   T   Y   +A+ +  RRDA ALS   
Sbjct: 1   MKTSCTLEVHIDGAWRQAGGLALTAAVEQGMAASTFFAYETVHAIDYLGRRDAAALSVNL 60

Query: 61  PVSLASLDLPHWPVFLIDMLPQGYGRQELLRRLGLSENAEAAGDWPLLLAGAGNPIGNLR 120
           PV+L +L  P WP FLID+LPQGYGR ELLR+LGL E  EA+ DWPLL AGAGNPIGN+R
Sbjct: 61  PVALDNLSEPRWPAFLIDLLPQGYGRAELLRQLGLDERTEASADWPLLCAGAGNPIGNIR 120

Query: 121 IKEAAQWLQRQDGP-LHGFTDEEVATRADDFTEYLARHGLFVAGSSGVQGEWPKILLTRA 179
           + EA +W+Q +  P L GF  EE+A R++DF EYLA+HGLF+AGSSGVQGEWPKILLTRA
Sbjct: 121 VLEAWEWVQARSAPQLRGFAMEEIAARSEDFNEYLAQHGLFLAGSSGVQGEWPKILLTRA 180

Query: 180 DDGLLYLDHALPDERAREHYIVKFGRGANERLAQILRQEAPYMEIARHLGLRVHARLHMQ 239
            DGL YLDHALPDE A  HYIVKFGRG +  LA ILR EAPYM++A  LGL VHA L + 
Sbjct: 181 RDGLFYLDHALPDELAERHYIVKFGRGPDPDLADILRLEAPYMQMAARLGLHVHAPLELH 240

Query: 240 ERALFIPRFDRRVDGGKVIRLAQESLAALTGKPGFGQVPTHDEACMRLCEIASDPLAEIC 299
            +ALFIPRFDR V G +V+R AQES+A+L G  GF  +PTH+  C RL E+A+DP+ EI 
Sbjct: 241 GKALFIPRFDREVRGTQVLRHAQESIASLCGVTGFAAMPTHNAVCARLGEVATDPVTEII 300

Query: 300 EYLRRDVA 307
           EYL+RD+A
Sbjct: 301 EYLKRDIA 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,336,940
Number of extensions: 63286
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)