BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0107.0003.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311525|ref|YP_003775617.1| organic radical activating enzy...   329   1e-91

>gi|300311525|ref|YP_003775617.1| organic radical activating enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  329 bits (843), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/204 (78%), Positives = 172/204 (84%), Gaps = 4/204 (1%)

Query: 1   MHAEGAAPHPTAGRPAVFCRFSGCNLWTGREEDRSKAICQFCDTDFVGTDGEGGGKFKTS 60
           +  EGA     AGRPAVFCRFSGCNLWTGREEDR +AICQFCDTDFVGTDGE GGKFK+ 
Sbjct: 30  LQGEGA----HAGRPAVFCRFSGCNLWTGREEDRVRAICQFCDTDFVGTDGENGGKFKSP 85

Query: 61  DALAQAINQLWPASYAASKYVVFTGGEPLLQLDEVLIASMHAVGFEIAIETNGTIPVPPG 120
             LA  I+ LWPA YA SKYVVFTGGEPLLQLD  LI +MHAVGFEIAIETNGTI VP G
Sbjct: 86  AELAAKIDSLWPARYAPSKYVVFTGGEPLLQLDAALIEAMHAVGFEIAIETNGTIDVPDG 145

Query: 121 VDWICVSPKMGSELKVFKGSELKVVIPQQAQVLADYEKLDFAHFLLQPMDGPEAVRNTKM 180
           VDWICVSPKMGSELKV +GSELKVV+PQ  Q L +YEKLDF HFLLQPMDG +A  NT++
Sbjct: 146 VDWICVSPKMGSELKVRRGSELKVVVPQPGQPLDEYEKLDFQHFLLQPMDGLQAAANTRL 205

Query: 181 AIELVKNNPKWKLSIQTHKLLQIP 204
           AIE+VKNNPKWKLSIQTHKLL IP
Sbjct: 206 AIEMVKNNPKWKLSIQTHKLLNIP 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 695,123
Number of extensions: 29236
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)