BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0008.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310779|ref|YP_003774871.1| D-amino acid dehydrogenase smal...   126   5e-31
gi|300311555|ref|YP_003775647.1| D-amino acid dehydrogenase smal...    63   7e-12
gi|300311013|ref|YP_003775105.1| glycine/D-amino acid oxidase [H...    58   3e-10

>gi|300310779|ref|YP_003774871.1| D-amino acid dehydrogenase small
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 436

 Score =  126 bits (317), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 66/68 (97%)

Query: 1   VLRADAFVVAMGSFSEPLLRPLGINLLLYPGKGYSATYKVTNPDAAPTVSLTDDGYKLVV 60
           VL+AD FVVAMGSFS+ L++PLGI+LLLYPGKGYSATY++TNPDAAPTVSLTDDGYKLVV
Sbjct: 252 VLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTVSLTDDGYKLVV 311

Query: 61  SRLGDRLR 68
           SRLGDRLR
Sbjct: 312 SRLGDRLR 319


>gi|300311555|ref|YP_003775647.1| D-amino acid dehydrogenase small
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score = 63.2 bits (152), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 43/67 (64%)

Query: 2   LRADAFVVAMGSFSEPLLRPLGINLLLYPGKGYSATYKVTNPDAAPTVSLTDDGYKLVVS 61
           L  DA VVA G  S  LL+PL  +L L   + YSA   V NPD APT++L DD YK+ ++
Sbjct: 249 LTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYDDSYKVAMT 308

Query: 62  RLGDRLR 68
           RLG R+R
Sbjct: 309 RLGSRIR 315


>gi|300311013|ref|YP_003775105.1| glycine/D-amino acid oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score = 57.8 bits (138), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 1   VLRADAFVVAMGSFSEPLLRPL-GINLL-LYPGKGYSATYKVTNPDAAPTVSLTDDGYKL 58
           +++AD++VVA+GS+S  LL  + G+  + +YP KGYS T  +T+  AAP  ++ D+ YK+
Sbjct: 243 LVQADSYVVALGSYSPQLLGEVPGLPAIPVYPLKGYSITVPITDASAAPVSTILDETYKI 302

Query: 59  VVSRLGDRLR 68
            V+R  DR+R
Sbjct: 303 AVTRFDDRIR 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 404,596
Number of extensions: 14634
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 4
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)