BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0005.p
         (462 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillu...   469   e-133

>gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillum
           seropedicae SmR1]
          Length = 691

 Score =  469 bits (1206), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/458 (57%), Positives = 304/458 (66%), Gaps = 51/458 (11%)

Query: 9   STISRLSLVPKMAQSPQEVIGFLEDLGRRARSYGEKDWDELRAFAREELGLDTLEAWDMT 68
           +  + +SLV KMA+SP EVI FLEDLG+RAR +G+KD++EL+AFARE+LGLD L+AWD T
Sbjct: 281 ANFAEVSLVAKMAKSPSEVIAFLEDLGQRARPFGQKDYEELKAFAREKLGLDELKAWDST 340

Query: 69  YAAEKLREQRYAFSEQEVKQYFPEPKVTEGLFQVIQRLFNVNIKPDSAPVWHPDVKFFRI 128
           YA+EKLREQRYAFSEQEVKQYFPEPKV  GLFQV Q+LF V IKPDSAPVWH DVKFFRI
Sbjct: 341 YASEKLREQRYAFSEQEVKQYFPEPKVVGGLFQVAQQLFGVQIKPDSAPVWHKDVKFFRI 400

Query: 129 ERDGKLVGQFYLDLYARSGKRGGAWMDPVAELSLVPKMAQSPQEVIGFLEDLGRRARSYG 188
           ERDG+LVGQFYL                                      DL  R+   G
Sbjct: 401 ERDGQLVGQFYL--------------------------------------DLYARSGKRG 422

Query: 189 EKDWDELRAFAREELGLDTLEAWDMTYAAEKLREQRYA----FSEQEVKQYFPEPKVTEG 244
               D+ RA      G+ T  A+ +    E       A    F+  EV   F E     G
Sbjct: 423 GAWMDDARARRLTAQGVQTPIAYLVCNFTEPAVVDGVAKPALFTHDEVITLFHE--FGHG 480

Query: 245 LFQVIQRLFNVNIKPDSAPVWHPDVKFFRIERDGKLVGQFYLDLYARSGKRGGAWMXGAP 304
           L  ++ ++  V +   S   W        +E   + +  F  +          A   G P
Sbjct: 481 LHHMLTQVDEVGVSGISGVEWDA------VELPSQFMENFCWEWDVLQQLTAHA-DTGEP 533

Query: 305 LPRELFDKMTAAKNFQSGLQMLRQVEFSLFDMHIHYDYDASGKDSVQSVLNAVRDKFAVI 364
           LPR L+DKM AAKNFQSGLQMLRQVEFSLFDM IH++Y+  G  +VQ +L++VRD+ AVI
Sbjct: 534 LPRALYDKMIAAKNFQSGLQMLRQVEFSLFDMLIHHEYEVGGNQTVQQLLDSVRDRIAVI 593

Query: 365 RPPEFNRFQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAAKGDNVVSIETGLRF 424
           RPPEFNRFQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAA   NV+S+ETG RF
Sbjct: 594 RPPEFNRFQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAAGSGNVISLETGRRF 653

Query: 425 QKEILAVGGSRPAIESFKAFRGREPSIDALLRHSGMAA 462
           Q+EILAVGGSRPAIESFKAFRGREPSIDALLRHSGMAA
Sbjct: 654 QQEILAVGGSRPAIESFKAFRGREPSIDALLRHSGMAA 691


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,404,079
Number of extensions: 57213
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 3
Length of query: 462
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 373
Effective length of database: 1,198,455
Effective search space: 447023715
Effective search space used: 447023715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)