BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0106.0004.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillu...   320   5e-89

>gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillum
           seropedicae SmR1]
          Length = 691

 Score =  320 bits (821), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 161/206 (78%), Positives = 182/206 (88%), Gaps = 6/206 (2%)

Query: 12  TTTVAPDHNPLLDFSGLARFDAIRPEHVTPAVDTLLAKAGALVTELEAPMAPTMQLTWAN 71
           TT +A   NPLLDFSG A+FDAI+PEHVTPA+D LLA A  LVTELEAPMA   ++TW N
Sbjct: 3   TTDIAA--NPLLDFSGYAQFDAIQPEHVTPALDKLLADASRLVTELEAPMA---EVTWDN 57

Query: 72  FVEPLENATEQLGRAWSIVGHLNSVVDTPELRAAYNENQPRLVEFWTALGQNLALFDKYK 131
           FV+PLE+ATE+LGRAWS+VGHLNSV+DTP LRA YNENQPRLVEFWT+LGQNLALF+KYK
Sbjct: 58  FVKPLESATEKLGRAWSVVGHLNSVMDTPALRATYNENQPRLVEFWTSLGQNLALFEKYK 117

Query: 132 ALQAGPEYAGLSAARKKVIDNAVRDFRLSGAELPDDKKERFAEIQEKSAALTTRFSENIL 191
           ALQA P +A LSAAR+KV+DNAVRDFRLSGAEL +DKKERFAEIQEK A LTTRFSEN+L
Sbjct: 118 ALQASPAFASLSAARRKVVDNAVRDFRLSGAELAEDKKERFAEIQEKQAMLTTRFSENVL 177

Query: 192 DATNDFALFVEDESDLAGLP-DVHAA 216
           DATNDFALFVEDE++L+GLP DV  A
Sbjct: 178 DATNDFALFVEDEAELSGLPADVKQA 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 789,958
Number of extensions: 33162
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)