BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0105.0005.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313414|ref|YP_003777506.1| phenylacetic acid degradation p...   239   1e-64

>gi|300313414|ref|YP_003777506.1| phenylacetic acid degradation
           protein [Herbaspirillum seropedicae SmR1]
          Length = 181

 Score =  239 bits (609), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 132/169 (78%)

Query: 11  EQLQEQIWSWLHLVPDPEIPVISVVDLGIVRDVQVSTDDQQEVQCTVVITPTYSGCPAMQ 70
           + L+ +IW WL  VPDPEIPV+SVVDLGIVR+V++      + +CTVVITPTYSGCPAM 
Sbjct: 13  DALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMG 72

Query: 71  VISQEIIAVLAQHGVAGVNIQTRLSPAWSTDWMSEHGKSRLKGYGIAPPAQQVIDISGIS 130
           VI+++I  VL + G+A V I+ +L+PAWSTDWMSE G+  L+ YGIAPPAQQVIDI GI 
Sbjct: 73  VIAEDITTVLQEKGLAQVAIRIQLAPAWSTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQ 132

Query: 131 RKRQQVPEVACPHCGSMHTVVVSQFGSTSCKSLYQCKDCLEPFDYFKAH 179
            K     +V CPHCGS  TV VSQFGSTSCK+LYQCKDC EPFDYFKAH
Sbjct: 133 LKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 529,775
Number of extensions: 19762
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)