BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0004.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310119|ref|YP_003774211.1| hypothetical protein Hsero_0784...   108   2e-25

>gi|300310119|ref|YP_003774211.1| hypothetical protein Hsero_0784
           [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score =  108 bits (271), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 13/160 (8%)

Query: 2   INTRI---GVDRTGLGEVGGLAEIPEIAQTQPVFKSRPFLLPGEEEASLPEFDYPLDPVQ 58
           +N RI   G+ R    + G LAEI        + KSRP L   EE ASLP  + P+DP+Q
Sbjct: 1   MNARIAAPGIGRQLPVDPGELAEIHSTEALTGLQKSRPLLSNEEEAASLPALELPVDPLQ 60

Query: 59  ESLKQILGARLSVDNPAWVGDPIPRMRALQKKMIEFSLT-QETSERGVCMEAIRVVELAV 117
             L ++LG  L+ DNP W GDP+P +R LQ+ ++  SLT  E + R   M+A+R VELAV
Sbjct: 61  RVLTELLGPALTSDNPVWRGDPVPSLRGLQRLLVAHSLTLPEGAARAPLMDALRQVELAV 120

Query: 118 RWRLRWQQMRRSDLEGHPTSVGTQDTQDTRGRDHEEQETA 157
           R RLRW QM+ ++        G  DT+      H ++ETA
Sbjct: 121 RMRLRWLQMKHAE-----ALTGVADTEAA----HAQEETA 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 508,843
Number of extensions: 19828
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)