BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0103.0015.p (328 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311150|ref|YP_003775242.1| molecular chaperone (16 kDa) he... 260 1e-70 gi|300311145|ref|YP_003775237.1| transcription regulator protein... 182 3e-47 gi|300312835|ref|YP_003776927.1| LysR family transcription regul... 80 3e-16 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 72 5e-14 gi|300309859|ref|YP_003773951.1| LysR family transcription regul... 68 1e-12 >gi|300311150|ref|YP_003775242.1| molecular chaperone (16 kDa) heat shock protein A [Herbaspirillum seropedicae SmR1] Length = 150 Score = 260 bits (665), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 129/151 (85%), Positives = 137/151 (90%), Gaps = 3/151 (1%) Query: 179 MRTHDFSPLYRSAIGFDRLAQLFDNAQRADSQPSYPPYNIELVAEDKYRITMAVAGFSSA 238 MRT D SPLYR+AIGFDRLAQ+FDNAQRAD QPSYPPYNIELVAEDKYRITMAVAGF+ + Sbjct: 1 MRTFDLSPLYRTAIGFDRLAQMFDNAQRAD-QPSYPPYNIELVAEDKYRITMAVAGFARS 59 Query: 239 EIDIEAENDTLKIVGRKQKEDQAVNFLHRGIAARDFEQRFQLANHIKVVGAQLENGLLSI 298 EIDIE EN+TLKI GRKQKED+ VNFLHRGIAARDFEQRFQLANHIKVVGA LENGLL+I Sbjct: 60 EIDIETENETLKITGRKQKEDKQVNFLHRGIAARDFEQRFQLANHIKVVGANLENGLLNI 119 Query: 299 ELVREVPEALKPRKIEING--DNVHRLERNA 327 ELVRE+PEALKPRKIEI DNV RLER A Sbjct: 120 ELVREIPEALKPRKIEIGSQDDNVQRLERAA 150 >gi|300311145|ref|YP_003775237.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 182 bits (462), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 92/128 (71%), Positives = 108/128 (84%) Query: 5 QRPLDLDAVQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEDRLGRRLLERTPRQVRL 64 ++PLDLDAVQAFVL AD+ SFTRAAEAL +TQSA+SLKLK+LE RLGRRLLERTPRQVRL Sbjct: 2 EKPLDLDAVQAFVLAADLHSFTRAAEALESTQSAVSLKLKKLEQRLGRRLLERTPRQVRL 61 Query: 65 SSDGLGFLDAARNLLTAHERALGRMETSTVRLSLGISDHVAGDGLPAILAQINAFDPGVV 124 S++G FL AAR LL AHERAL +++ VR S+GISDHVAG LP LAQ++A DPGVV Sbjct: 62 SAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVV 121 Query: 125 VEVRIGAS 132 VEVR+ +S Sbjct: 122 VEVRVASS 129 >gi|300312835|ref|YP_003776927.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 8 LDLDAVQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEDRLGRRLLERTPRQVRLSSD 67 LDLD + V VAD +F+RAAE ++ TQSA+S+++K LE LG+ L R PR V + D Sbjct: 4 LDLDVLAMIVAVADTGNFSRAAELVHRTQSAVSMQIKTLELALGKPLFLRKPRSVVPTQD 63 Query: 68 GLGFLDAARNLLTAHERALGRMETSTV--RLSLGISDHVAGDGLPAILAQINAFDPGVVV 125 G L AR +LT + A + V R+ +G+ D A LP+IL + +A P V + Sbjct: 64 GEVLLTYARRMLTLRDEAWAAVVRPDVTGRVVIGVPDDYASSLLPSILKKFSATYPKVEI 123 Query: 126 EV 127 +V Sbjct: 124 QV 125 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 67/118 (56%), Gaps = 4/118 (3%) Query: 8 LDLDAVQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEDRLGRRLLERTPRQVRLSSD 67 +D+ VQAFV +AD SF AA AL+ TQ+A++L+L++LED LG L+ERT R + L+ Sbjct: 3 IDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTEI 62 Query: 68 GLGFLDAARNLLTAHERALGRM-ETSTVR---LSLGISDHVAGDGLPAILAQINAFDP 121 G FL AR LL AL + ET R +S+ V LP IL +A P Sbjct: 63 GRDFLPQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYP 120 >gi|300309859|ref|YP_003773951.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 13 VQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEDRLGRRLLERTPRQVRLSSDGLGFL 72 +Q F A SFT A L TQS +S ++RLE+ LGRRL R + L++DG L Sbjct: 22 LQTFSTAASSASFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTADGESLL 81 Query: 73 DAARNLLTAHERALGRMETSTV--RLSLGISDHVAGDGLPAILAQINAFDPGVVVEVRIG 130 AR +L AH RA + + R+ G SD +A LP +LA + P V +E+ IG Sbjct: 82 VHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVELEITIG 141 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 883,557 Number of extensions: 33094 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 14 Length of query: 328 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 242 Effective length of database: 1,212,660 Effective search space: 293463720 Effective search space used: 293463720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)