BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0103.0012.p (365 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 630 0.0 gi|300311074|ref|YP_003775166.1| transcription regulator protein... 145 3e-36 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 143 2e-35 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 141 8e-35 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 125 4e-30 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 630 bits (1626), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/366 (83%), Positives = 329/366 (89%), Gaps = 1/366 (0%) Query: 1 MRPEITSFAGGLPSPATFPVERMKAAFDTVLTQQGKIALQYGPTDGYGPLREWVANSLST 60 MRP+ITSFAGGLPSP TFPVE MK AFD VL+QQGK+ALQYGPTDGY PLREW+A SLST Sbjct: 33 MRPDITSFAGGLPSPLTFPVEHMKTAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLST 92 Query: 61 DGARILPEQVLMVSGSQQGLDLLGKVLIDEGSNVMVETPSYLGALQAFSIYGPNFISVPS 120 +GA+I EQVLMVSGSQQGLDLLGKVLIDEGS V+VETPSYLGALQAF++YG F SVPS Sbjct: 93 NGAQISAEQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVPS 152 Query: 121 DEQGLIPSAVEELGKGARLLYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYG 180 DE GL P +E + GAR+LYSLPNFQNPTGRTLP ERRF LVE CARLGLPLIEDDPYG Sbjct: 153 DEFGLQPETIEAIAGGARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYG 212 Query: 181 ALSYRNDPLPKMLNMNPAGVIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHT 240 ALSY+N PLPKML+MNP+GVIYMGSFSKVLTPGIRLGYVVAP PLILKMEQAKQA DLHT Sbjct: 213 ALSYQNAPLPKMLSMNPSGVIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHT 272 Query: 241 AQLTQMVVYEAVKDGFLQTHIPTIRKLYADQCQAMLDALQTYFPAGTSWTKPEGGMFIWV 300 AQLTQMVVYEA+KDGFL H+PTIRKLY DQCQAMLDALQ YFPA SW+KPEGGMFIWV Sbjct: 273 AQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWV 332 Query: 301 TLPKHIDSGALLKEAVEQH-VAFVPGAPFYANEPQHNTLRLSFVTVPPEKIRAGVERLGK 359 TLP+HID+GALL EAVEQ VAFVPGAPFYAN Q NTLRLSFVTVPPE+IRAGVERLGK Sbjct: 333 TLPEHIDAGALLNEAVEQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLGK 392 Query: 360 LIAAKL 365 LIA+KL Sbjct: 393 LIASKL 398 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 145 bits (367), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 168/362 (46%), Gaps = 12/362 (3%) Query: 8 FAGGLPSPATFPVERMKAAFDTVLTQQGKIALQYGPTDGYGPLREWVANSLSTDGARILP 67 +G +P + VE +K A L ++ ++ P +G R+ VA G RI Sbjct: 153 LSGMTCAPQLYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALNAGMRIDT 212 Query: 68 EQVLMVSGSQQGLDLLGKVLIDEGSNVMVETPSYLGALQAFSIYGPNFISVPSDEQGLIP 127 E+V++ G + L+L + + G + VE+P+Y G LQA G + +P+ I Sbjct: 213 EEVVVTHGCIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGIS 272 Query: 128 SAVEELG----KGARLLYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYGALS 183 EL + + +PN QNP G +P + + LV C +L LPLIEDD Y L+ Sbjct: 273 VEALELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTELA 332 Query: 184 YRNDPLPKMLNMNPAG-VIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHT-- 240 + + + + G VIY S +KVL PG+RLG++ E+ K HT Sbjct: 333 DGSVTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGR----WHERVKMLKFTHTRA 388 Query: 241 -AQLTQMVVYEAVKDGFLQTHIPTIRKLYADQCQAMLDALQTYFPAGTSWTKPEGGMFIW 299 + TQ+ + + H+ +R++ Q + M +++ YFP GT P GG+ +W Sbjct: 389 NEEWTQVTAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLW 448 Query: 300 VTLPKHIDSGALLKEAVEQHVAFVPGAPFYANEPQHNTLRLSFVTVPPEKIRAGVERLGK 359 V LP + S L + A+ + V PGA F + + +R+ ++ + RLG Sbjct: 449 VELPVQVCSQQLFERALAEGVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRLGG 508 Query: 360 LI 361 L+ Sbjct: 509 LV 510 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 172/353 (48%), Gaps = 5/353 (1%) Query: 13 PSPATFPVERMKAAFDTVLTQQGKIALQYGPTDGYGPLREWVANSLSTDGARILPEQVLM 72 P+PA FP R+ + + ++ G+ L +A +G ++ PE++++ Sbjct: 124 PNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPEEIVI 183 Query: 73 VSGSQQGLDLLGKVLIDEGSNVMVETPSYLGALQAFSIYGPNFISVPSD-EQGLIPSAVE 131 G+ + ++L + + G + VETP++ L A G + +P+D ++G+ A+E Sbjct: 184 TVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVGALE 243 Query: 132 ELGKGARL--LYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYGALSYRNDPL 189 E K + +PNFQNP G +P + LV + +P+IE+ Y L Y N Sbjct: 244 ERMKTQAIAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGNAHP 303 Query: 190 PKMLNMNPAG-VIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHTAQLTQMVV 248 + N + G V++ SFSK LT R+G+ + P ++E+ K L T Q + Sbjct: 304 SSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAM-PGRYRAQVEKLKFLNTLATPTAPQRAI 362 Query: 249 YEAVKDGFLQTHIPTIRKLYADQCQAMLDALQTYFPAGTSWTKPEGGMFIWVTLPKHIDS 308 E + G + H+ +R+ +A Q M + +FPAGT ++P+GG +WV LP+ +D+ Sbjct: 363 AEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQGVDA 422 Query: 309 GALLKEAVEQHVAFVPGAPFYANEPQHNTLRLSFVTVPPEKIRAGVERLGKLI 361 L + ++ + PG F A + +RL++ ++ ++ +GKL+ Sbjct: 423 MELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKETEQALKLVGKLV 475 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 141 bits (356), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 4/362 (1%) Query: 7 SFAGGLPSPATFPVERMKAAFDTVLTQQGKIALQYGPTDGYGPLREWVANSLST-DGARI 65 +F G+P P + + + L YGP GY LRE +A L Sbjct: 155 AFMPGVPDVTCVPYKIWGRLQNKHWRRSNADLLTYGPGAGYAGLREQIAEYLRVARSVNC 214 Query: 66 LPEQVLMVSGSQQGLDLLGKVLIDEGSNVMVETPSYLGALQAFSIYGPNFISVPSDEQGL 125 P QVL+ +G Q LD++ K+L + G + VE P Y G + G + + D++G+ Sbjct: 215 TPSQVLITTGIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGM 274 Query: 126 IPSAVEELGKGARLLYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYGALSYR 185 + L + R + + P+ Q P G + L RR L+E A + +IEDD Y Sbjct: 275 -RMRLANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYG 333 Query: 186 NDPLPKMLNMNPAG-VIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHTAQLT 244 PL + M+ V+YMG+FSK++ PG+R+G++V P L + Sbjct: 334 GRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTGIAELYRNGQVFL 393 Query: 245 QMVVYEAVKDGFLQTHIPTIRKLYADQCQAMLDALQTYFPAGTSWTKPEGGMFIWVTLPK 304 Q + + + +G +HI +R LYA++ Q + ++ +F + T E G+ + + LP+ Sbjct: 394 QATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQ 453 Query: 305 HIDSGALLKEAVEQHVAFVPGAPFYAN-EPQHNTLRLSFVTVPPEKIRAGVERLGKLIAA 363 D + ++A+ + P + +Y + L L + +VP ++I ++L +I Sbjct: 454 ECDDVLICEQALAAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVIKP 513 Query: 364 KL 365 L Sbjct: 514 HL 515 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 125 bits (315), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/331 (25%), Positives = 151/331 (45%), Gaps = 8/331 (2%) Query: 21 ERMKAAFDTVLTQQGKIALQYGPTDGYGPLREWVANSLSTDGARILPEQVLMVSGSQQGL 80 E + A ++ G + YG GY PLR+ + L + EQVL G+ Q L Sbjct: 136 EGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQAL 195 Query: 81 DLLGKVLIDEGSNVMVETPSYLGALQAFSIYGPNFISVPSDEQGLIPSAVEELGKGA--R 138 DL+ + + G V+++ P Y + + G N I VP G+ +E L + + Sbjct: 196 DLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLETLARTHHPK 255 Query: 139 LLYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYGALSYRNDPLPKMLNMNPA 198 + ++ QNPTG + +++A R G ++EDD + L DP+ L+ Sbjct: 256 MFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQATDPMLAALD-GLQ 314 Query: 199 GVIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHTAQLTQMVVYEAVKDGFLQ 258 VIY+GS+SK + P +R+GY+ L ++ K L +++ + +V+ + +G + Sbjct: 315 RVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHR 374 Query: 259 THIPTIRKLYADQCQAMLDALQTYFPAGTSWTKPEGGMFIWVTLPK-HIDSGALLKEAVE 317 H+ T+ QA L+A + T +T GGMF W T+ + + + A + Sbjct: 375 RHVQTLNATLLS-AQATLNAKLSEVGL-TPFTAARGGMFSWATIEGCELSAREIADRARQ 432 Query: 318 QHVAFVPGAPFYANEPQHNTLRLS--FVTVP 346 + + PG F+ + P + R + + VP Sbjct: 433 KGIWLAPGDFFHLSAPHQTSFRFNVGYADVP 463 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,293,436 Number of extensions: 59705 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 10 Length of query: 365 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 279 Effective length of database: 1,212,660 Effective search space: 338332140 Effective search space used: 338332140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)