BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0085.p
         (196 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312463|ref|YP_003776555.1| Mn2+/Zn2+ ABC transporters perm...   252   2e-68

>gi|300312463|ref|YP_003776555.1| Mn2+/Zn2+ ABC transporters
           permease [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  252 bits (643), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/181 (81%), Positives = 163/181 (90%)

Query: 2   LLHDFYQFAIAPFQEFAFMRRALVATLALALSSAPLGVMLTLRRMSLFGEALSHAVLPGV 61
           LL   +Q A+ PFQEF+FMRRALVA  ALAL SAPLGV+LTLRRMSLFGEALSHAVLPGV
Sbjct: 3   LLSLMHQLAVEPFQEFSFMRRALVAAFALALGSAPLGVLLTLRRMSLFGEALSHAVLPGV 62

Query: 62  AAGFIFFGLSLPALSIGGFLAGVIVVALAGWISRHTELKEDASLAAVYVVALALGVIMIS 121
           A GFIFFGLSLPALSIGGF AGV+VVA+AGWISRHTELKEDASLAA+YVVALALGVI+IS
Sbjct: 63  AVGFIFFGLSLPALSIGGFAAGVLVVAVAGWISRHTELKEDASLAAIYVVALALGVILIS 122

Query: 122 GHGTQLDLLHILFGNVLGVDTEGLLLVAGVSSLSVLLMAGLYRGLLLESFDPSFLAXKKR 181
            HGTQLDLLHILFGNVLGVD+EGL+L+AGV+S SVL +A LYRGLLLESFDPS++A    
Sbjct: 123 RHGTQLDLLHILFGNVLGVDSEGLVLIAGVASASVLGIAALYRGLLLESFDPSYMAVGGG 182

Query: 182 R 182
           R
Sbjct: 183 R 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 456,451
Number of extensions: 13230
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 116
Effective length of database: 1,241,070
Effective search space: 143964120
Effective search space used: 143964120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)