BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0084.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312462|ref|YP_003776554.1| Mn2+/Zn2+ ABC transporter perip...   228   2e-61

>gi|300312462|ref|YP_003776554.1| Mn2+/Zn2+ ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  228 bits (580), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/162 (70%), Positives = 131/162 (80%), Gaps = 2/162 (1%)

Query: 1   MERVTQSANYRGDIVVASQGIAVRDRVEEEHDHDSHDGHDHHHG--KNDPHAWQNPANIV 58
           MER+ QSANYRG IVVAS GI  R+RV E+ D   HD    H    K+DPHAWQ+P N+V
Sbjct: 91  MERLAQSANYRGPIVVASAGIKARERVGEDEDEHGHDHAAAHEHHGKDDPHAWQDPQNVV 150

Query: 59  IYTQNIVAALSKLDPAGAALYRKNGDAYIASLNELDRWAIQQFAQFPPAKRKVITSHDAF 118
           +YT+NIV AL+KLDPAGAA+YRKNGDAYIA L +LD WA +QFAQ P AKRKVITSHDAF
Sbjct: 151 VYTRNIVTALAKLDPAGAAVYRKNGDAYIAKLQDLDAWAARQFAQIPDAKRKVITSHDAF 210

Query: 119 EYFGAHYQVRFLAPQGVSTESEPSAKEVAGLIRQIRKEKXKS 160
           EYFGA YQVRFLA QGVST+SEPSA+E+A LIRQIR EK K+
Sbjct: 211 EYFGARYQVRFLAAQGVSTDSEPSAREIAALIRQIRTEKIKA 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 443,998
Number of extensions: 15138
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)