BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0102.0081.p (384 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312460|ref|YP_003776552.1| LysR family transcription regul... 346 2e-96 gi|300313964|ref|YP_003778056.1| LysR family transcription regul... 132 4e-32 gi|300310906|ref|YP_003774998.1| LysR family transcription regul... 117 1e-27 gi|300314051|ref|YP_003778143.1| transcription regulator protein... 110 3e-25 gi|300310443|ref|YP_003774535.1| LysR family transcription regul... 107 2e-24 >gi|300312460|ref|YP_003776552.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 346 bits (888), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 174/226 (76%), Positives = 197/226 (87%) Query: 1 MSLSLPPLKALKVFEAAARTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGV 60 M SLPPLKALKVFEAA RTRSLT+AAHEL ITHSAVSQQIK LEE+F QPLF+R RGV Sbjct: 1 MPSSLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 Query: 61 EATEAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRLITAPSVAMRWLIPRLSQFQIDN 120 E TEAA +FY EV+A+LDRIA+AAEQL L GK+R+VRLI APSVAMRWLIPRLSQFQIDN Sbjct: 61 EPTEAALSFYAEVKASLDRIALAAEQLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 Query: 121 PRIEVRVTTTVSEHFEDLKDPFDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHPI 180 PRIEVRVTTT+SE+FED+KDPFDV++WRSPLERSG+EC+RFLDDVS PLASPH+LE HPI Sbjct: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYECMRFLDDVSVPLASPHFLETHPI 180 Query: 181 NKPADLLQASLIHLSVRADAWQQWLIKAGVPVKKKLPGTSYEHFFL 226 P D ++ LIHLS R+ AW QWL KAGV V++K+PGT YEH FL Sbjct: 181 RVPRDFVEVPLIHLSSRSAAWSQWLSKAGVAVRRKMPGTVYEHSFL 226 >gi|300313964|ref|YP_003778056.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 132 bits (332), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 114/235 (48%), Gaps = 15/235 (6%) Query: 5 LPPLKALKVFEAAARTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEATE 64 LPPL AL+ FEA AR S T AA ELH+T SAVS+Q+++LE H Q LF+RL R +E T Sbjct: 4 LPPLTALRAFEATARLLSFTAAADELHVTQSAVSRQVRILEAHLEQKLFVRLTRRIELTR 63 Query: 65 AAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRLITAPSVAMRWLIPRLSQFQIDNPRIE 124 A A++ ++R A +RI A EQL + + + P +A WL+PRL F +N I+ Sbjct: 64 AGAAYFQQIRQAFERICAAGEQLHARRQRHTLTIGVLPGLASLWLVPRLELFWRENKEID 123 Query: 125 VR-VTTTVSEHFEDLKDPFDVVLWRSPLERS-GFECVR-------------FLDDVSAPL 169 VR V T + F + + P S G + D L Sbjct: 124 VRIVVATGAADFGRTTMDMSIQVGNLPGTTSQGLPLKKRMAVDWHDLRADLLFPDALVAL 183 Query: 170 ASPHYLELHPINKPADLLQASLIHLSVRADAWQQWLIKAGVPVKKKLPGTSYEHF 224 P HP+ ADL Q LIH ++R DAW WL + G + + G + Sbjct: 184 CHPRLWRQHPVRSVADLSQHRLIHTAIRPDAWAHWLQQHGSRLGARQAGMECSQY 238 >gi|300310906|ref|YP_003774998.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 2/218 (0%) Query: 7 PLKALKVFEAAARTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEATEAA 66 PL A++ F AAAR +S T+AAHEL++TH A+S+QIK LE + G PLF R R V TE Sbjct: 7 PLNAIRAFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQVLLTERG 66 Query: 67 QAFYTEVRAALDRIAMAAEQLTLTGKNRIVRLITAPSVAMRWLIPRLSQFQIDNPRIEVR 126 + F+ E AL+ +A AA ++ R V + PS A+RWLIP LS F P I + Sbjct: 67 RQFFEEASPALEILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGIAPQ 126 Query: 127 VTTTVSEHFEDLKDPFDVVLWRSPLE-RSGFECVRFLDDVSAPLASPHYLELHPINKPAD 185 V T+ + FD+ + R + RF++D +ASP L+ P+ + Sbjct: 127 VVTSTAT-VGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQAMPLEDVSG 185 Query: 186 LLQASLIHLSVRADAWQQWLIKAGVPVKKKLPGTSYEH 223 L + +++ R + W+ W AG+ + ++H Sbjct: 186 LARHTVLLSRSRRNDWEDWRKLAGLKRSRSQAMLHFDH 223 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 6/196 (3%) Query: 26 AAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEATEAAQAFYTEVRAALDRIAMAAE 85 AA E+H+T A+S Q++ LEE G LF+R + + TE Q F +R +L IA+AAE Sbjct: 28 AAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRISITETGQRFAATIRKSLSEIALAAE 87 Query: 86 QLTLTGKNRIVRLITAPSVAMRWLIPRLSQFQIDNPRIEVRVTTTVSEHFEDLK-DPFDV 144 L + + + + T PS A RWL PRL +F +P +EV + + H DL+ D DV Sbjct: 88 HLRSQNRQQRLVISTTPSFASRWLAPRLWRFIDAHPELEVVLQSAA--HLNDLRLDGIDV 145 Query: 145 VLWRSPLERSGFECVRFLDDVSAPLASPHY--LELHPINKPADLLQASLIHLSVRADAWQ 202 L SG + DD P+A+P Y + +PADL SL+ + R ++WQ Sbjct: 146 GLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKLARPADLAHCSLLRVDSR-ESWQ 204 Query: 203 QWLIKAGVPVKKKLPG 218 WL +AG+ + + G Sbjct: 205 PWLAEAGLELPEPTGG 220 >gi|300310443|ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 12/206 (5%) Query: 5 LPPLKALKVFEAAARTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEATE 64 LPPL L+ FEA AR +S +AA ELH+T SAVS Q+ LE + G LF R GV T Sbjct: 4 LPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVRITT 63 Query: 65 AAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRLITAPSVAMRWLIPRLSQFQIDNPRIE 124 A +A+ ++ A+ I AA G + + + +APS+A WL+ RL+ F P I Sbjct: 64 AGEAYLARIQGAISAI-TAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARSYPEIT 122 Query: 125 VRVTTTVSE-HFE----DLKDPFDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHP 179 ++ S+ +FE D+ + + W G ++ PLASP ++ + Sbjct: 123 FNLSAAHSQSNFELGEVDIDIRYGIPNW------PGLVVEPLFEERIVPLASPAFIREYR 176 Query: 180 INKPADLLQASLIHLSVRADAWQQWL 205 + KPADLL LI +V W W Sbjct: 177 LRKPADLLGVKLIRSNVSVVQWADWF 202 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,220,932 Number of extensions: 51890 Number of successful extensions: 241 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 29 Length of query: 384 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 297 Effective length of database: 1,207,925 Effective search space: 358753725 Effective search space used: 358753725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 131 (55.1 bits)