BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0078.p
         (693 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312456|ref|YP_003776548.1| excinuclease ABC subunit B [Her...  1154   0.0  

>gi|300312456|ref|YP_003776548.1| excinuclease ABC subunit B
           [Herbaspirillum seropedicae SmR1]
          Length = 693

 Score = 1154 bits (2984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/667 (85%), Positives = 603/667 (90%), Gaps = 34/667 (5%)

Query: 1   MADLSPVTAASSTLDESKFLTFPDSPYRLYQPFPPAGDQPAAIEKLVEGVHDGLFFQTLL 60
           MA+L+P+   ++ LDESKF+TFPDSP++LYQ FPPAGDQPAAI+KLVEGV+DGLF+QTLL
Sbjct: 1   MAELTPI---NTELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLL 57

Query: 61  GVTGSGKTYTFRKM-------------------RYLFXFREFFPQNAVEYFVSYYDYYQP 101
           GVTGSGKTYT                       +    FREFFP NAVEYFVSYYDYYQP
Sbjct: 58  GVTGSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQP 117

Query: 102 EAYVPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMI 161
           EAYVPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMI
Sbjct: 118 EAYVPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMI 177

Query: 162 LTLRAKDKVSQRDVIARLIQX------------TFRVRGDTIDVFPAEHAELAVRIEMFD 209
           LTLRAKDKVSQRDVIARLIQ             TFRVRGDTIDVFPAEHAELAVRIE FD
Sbjct: 178 LTLRAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFD 237

Query: 210 DEIDSLQLFDPLTGRVRQKIPRFTVYPGSHYVTPRATVLRAIETIKDELRERLEFFRKEN 269
           DEIDSLQLFDPLTGRVRQKIPRFT+YPGSHYVTPR+TVLRAIETIK+EL ERLEFFRKEN
Sbjct: 238 DEIDSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKEN 297

Query: 270 KLIEEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGAKAGDPPPTLVDYLPADAIMFLD 329
           KLIEEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGAK GDPPPTLVDYLP DAIMFLD
Sbjct: 298 KLIEEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAIMFLD 357

Query: 330 ESHVLIGQLNGMYNGDRARKTNLVDYGFRLPSALDNRPLKFDEFQGKMRQTIFVSATPAE 389
           ESHVLIGQLNGMYNGDRARK NLVDYGFRLPSALDNRPLKFDEF+ KMRQTIFVSATPA+
Sbjct: 358 ESHVLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPAD 417

Query: 390 YENTHSDQVVEQVVRPTGLVDPLISVRPATTQVDDLMQEITMRVKKNERVLVTTLTKRMS 449
           YENTH+DQVVEQVVRPTGLVDP+I+VRPATTQVDDLMQEI  R+ K+ERVLVTTLTKRM+
Sbjct: 418 YENTHADQVVEQVVRPTGLVDPIIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMA 477

Query: 450 EQLTEFLSDNGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVA 509
           EQLTEFLSDNG+KVRYLHSDIDTVERVEIIRDLRLGTFDV+VGINLLREGLDIPEVSLVA
Sbjct: 478 EQLTEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSLVA 537

Query: 510 ILDADKEGFLRSERSLIQTIGRAARNLNGMAILYGDKVTDSMQKAIGETERRRAKQLAFN 569
           ILDADKEGFLRSERSLIQTIGRAARNLNGMAILYGD VTDSM KAIGETERRRAKQLAFN
Sbjct: 538 ILDADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAIGETERRRAKQLAFN 597

Query: 570 EANGITPMGIKKEIRELIDGVYSPQEARVELMVAQEQANYEAMSEKQVSKEIKRLEKLMQ 629
            ANGI P GIKKEIRELIDGV++P +AR EL+VA+E+ NYE+MSEKQ+SKEIKRLEK MQ
Sbjct: 598 AANGIVPTGIKKEIRELIDGVFNPAQARTELLVAEEKKNYESMSEKQISKEIKRLEKQMQ 657

Query: 630 EHAKNLE 636
           EHAKNLE
Sbjct: 658 EHAKNLE 664


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,919,042
Number of extensions: 78258
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 601
Effective length of database: 1,184,250
Effective search space: 711734250
Effective search space used: 711734250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)