BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0077.p
         (83 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312455|ref|YP_003776547.1| aromatic-amino-acid aminotransf...   163   2e-42
gi|300313687|ref|YP_003777779.1| aspartate/tyrosine/aromatic ami...   105   5e-25

>gi|300312455|ref|YP_003776547.1| aromatic-amino-acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  163 bits (413), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/83 (95%), Positives = 81/83 (97%)

Query: 1   MRVRIREMRQLLVAKLKEKAPAHDFDFVIKQRGMFSYSGLTKAQVERLRNEFSIYAVDTG 60
           MRVRIREMRQLLVAKLKEKAP HDFDFVIKQRGMFSYSGLTKAQV+RLRNEFSIYAVDTG
Sbjct: 323 MRVRIREMRQLLVAKLKEKAPGHDFDFVIKQRGMFSYSGLTKAQVDRLRNEFSIYAVDTG 382

Query: 61  RICVAALNSKNIDAVVDAIAKVL 83
           RICVAALN+KNID VVDAIAKVL
Sbjct: 383 RICVAALNTKNIDVVVDAIAKVL 405


>gi|300313687|ref|YP_003777779.1| aspartate/tyrosine/aromatic
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  105 bits (263), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 61/83 (73%)

Query: 1   MRVRIREMRQLLVAKLKEKAPAHDFDFVIKQRGMFSYSGLTKAQVERLRNEFSIYAVDTG 60
           MRVR+R+MR  L ++LK   P  DF F+++Q GMF Y+GL+ AQV+RLR EF +YAV TG
Sbjct: 312 MRVRVRDMRVKLASQLKSAVPDQDFSFLLRQNGMFGYTGLSSAQVDRLREEFGVYAVGTG 371

Query: 61  RICVAALNSKNIDAVVDAIAKVL 83
           RICVA LN  N+  V + +A+VL
Sbjct: 372 RICVAGLNDSNVARVAETMAEVL 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 212,120
Number of extensions: 6606
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 83
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 29
Effective length of database: 1,364,180
Effective search space: 39561220
Effective search space used: 39561220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)