BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0102.0073.p (467 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herb... 191 2e-49 gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembr... 149 7e-37 gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herb... 116 3e-27 gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux ... 82 9e-17 >gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 422 Score = 191 bits (484), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 209/351 (59%), Gaps = 1/351 (0%) Query: 83 SWLSVVAVATGAFAFVTTEFLPVGLLPQIAHDLGVSPGTAGLMVTTPGVVAAISAPGLML 142 +W + ++A G F+ VT EFLP LL IA DL VS G AG VT +V A++AP + L Sbjct: 35 NWSGIASLALGVFSLVTAEFLPASLLTAIASDLHVSDGAAGQAVTATAIVGAVAAPSIPL 94 Query: 143 GAGRINRRFILLMLSVLLLASNLVSAFAPSFGVMLLGRALLGAALGGFWTLALATAGRLV 202 I+R+ ++LMLS+LLL SN+++ AP+ V+L+ R LLG ALGGFW++A A A RLV Sbjct: 95 LTRNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRLV 154 Query: 203 RQEHAAKATAMILSGVTFATVIGVPLGTFISGLSSWRASFIATGILAALALAAQTLLLPS 262 A+A ++IL+GV+ ATV P+G ++ L WR++F+A G+++ +A+A Q + +P Sbjct: 155 PDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVSLVAIAIQWIAIPR 214 Query: 263 LPSKAAIRFRDLTTLVSRRNPRKSLLMVALVFGAHFSSYTYIAPFLGQ-NGFSLTLITSV 321 LP K + L L+ R++ R +LL V LV HF+ +TYI P + Q S+T I++V Sbjct: 215 LPPKDHPSLKVLAELLGRKDVRVALLAVLLVVSGHFAGFTYIRPLMEQITHMSVTTISAV 274 Query: 322 LLAFGFVGFVSNLVISAFVTRHLQASLFGVVALLMVALFAMPLVHASQLGVTAMVIAWGV 381 LL +G GF N R + ++ AL+ + ++ + +S + + WG Sbjct: 275 LLGYGVGGFFGNFAGGFIAERSERYAIVSGGALIALLAASLWVAGSSPVVAAVAITLWGF 334 Query: 382 AFGAIPLCLSIWLQLSSPDLPEAGSALFVSIVQVAIAVGSFVGGVVVDAMG 432 AFGA P+ W+ ++PD E L V+ QVAIA G+ GGV+VD +G Sbjct: 335 AFGAFPVGFQTWIVRAAPDHAEGAGGLLVAAFQVAIASGAIGGGVLVDHVG 385 >gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 149 bits (375), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 189/355 (53%), Gaps = 13/355 (3%) Query: 80 PLRSWLSVVAVATGAFAFVTTEFLPVGLLPQIAHDLGVSPGTAGLMVTTPGVVAAISAPG 139 P+ W A+ AFA TTEF+ +GLLP++A +LGVS +AGL+VT + + AP Sbjct: 2 PIALW----ALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPL 57 Query: 140 LMLGAGRINRRFILLMLSVLLLASNLVSAFAPSFGVMLLGRALLGAALGGFWTLALATAG 199 L GR+ R+ +L+ L V+ + NL A AP + +++GR + A G F+ + A Sbjct: 58 LTATTGRLPRKTLLVALMVVFVVGNLACAIAPDYTTLMIGRVVASFAHGAFFGVGSVVAT 117 Query: 200 RLVRQEHAAKATAMILSGVTFATVIGVPLGTFISGLSSWRASFIATGILAALALAAQTLL 259 LV +E A A A++ +G+T A V+GVP GT++ WRA+F A ++ +ALAA +L Sbjct: 118 SLVPKEKQASAIALMFTGLTVANVLGVPFGTWLGQSYGWRATFWAVTVIGVIALAATAVL 177 Query: 260 LPSLPSKAAIRFRDLTTLVSRRNPRKSLLMVALVFGAHFSSYTYIAPFLGQ-NGFSLTLI 318 +P F ++ R LLM L FG F+++TYIAP L +GF + + Sbjct: 178 VPRSQGGEETDFGKEVRVLMRPQVMLGLLMTVLGFGGVFAAFTYIAPILTDLSGFPASAV 237 Query: 319 TSVLLAFGFVGFVSNLVISAFVTRHLQASLFG--VVALLMVALFAMPLVH--ASQLGVTA 374 + +LL FG + NL + L A+L G V+ ++ LF + + + A+ +GV Sbjct: 238 SPILLLFGLGLVIGNLAGGKLADKKLMATLLGSLVLLAAVLVLFGLTVDNKVAAIIGVGL 297 Query: 375 MVIAWGVAFGAIPLCLSIWLQLSSPDLPEAGSALFVSIVQVAIAVGSFVGGVVVD 429 M +A AF +P L + + + P S+ ++ + A G+++GGV +D Sbjct: 298 MGMA---AFATVP-PLQMRVLEKATGAPNLASSANIAAFNLGNAAGAWLGGVTID 348 >gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 385 Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 183/371 (49%), Gaps = 12/371 (3%) Query: 89 AVATGAFAFVTTEFLPVGLLPQIAHDLGVSPGTAGLMVTTPGVVAAISAPGLMLGAGRIN 148 A+A AF TTEF+ +GLLP +A DLGV+ AG++V+ + A AP L + + Sbjct: 7 ALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAILTAKWP 66 Query: 149 RRFILLMLSVLLLASNLVSAFAPSFGVMLLGRALLGAALGGFWTLALATAGRLVRQEHAA 208 R+ L+ L L + N++ A AP++ +++ R + F+ + A LV + A Sbjct: 67 RKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELVAPQKRA 126 Query: 209 KATAMILSGVTFATVIGVPLGTFISGLSSWRASF---IATGILAALALAAQTLLLPSLPS 265 +A A++ +G+T A ++GVPLGT + WR++F A G+LAA+ L T+L +P Sbjct: 127 QAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIML--WTMLPKKIPM 184 Query: 266 KAAIRFRDLTTLVSRRNPRKSLLMVALVFGAHFSSYTYIAP-FLGQNGFSLTLITSVLLA 324 +A F++ +++ R + SLL L + FS TYIA L GF+ + VLL Sbjct: 185 QAGNIFQEFRSIIDTRV-QLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESWVLLL 243 Query: 325 FGFVGFVSNLVISAFVTRHLQASLFGVVALLMVALFAMPLVHASQLGVTAMVIAWGV-AF 383 FG V LV L + GV + V L + + A + AWG AF Sbjct: 244 FGAGITVGGLVGGKLADWKLMPVMCGVFLCIAVVLGLFSITSHYKWPTLATMFAWGAFAF 303 Query: 384 GAIPLCLSIWLQLSSPDLPEAGSALFVSIVQVAIAVGSFVGGVVVDAMGIPSTL--WLGS 441 +P I + ++ P S L + A G++VGG+ + A G+P T +G+ Sbjct: 304 AVVP-GAQIRVLDTARGAPNLASTLNQGAFNLGNATGAWVGGLAISA-GLPLTDLPLIGA 361 Query: 442 ALGLLGLLAIA 452 LLGL +A Sbjct: 362 FFALLGLATVA 372 >gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 16/259 (6%) Query: 72 SAAENAASPLR--SWLSVVAVATGAFAFVTTEFLPVGLLPQIAHDLGVSPGTAGLMVTTP 129 SA ASP + S L+ +A G FA T F+ LLP++A D G+S +V Sbjct: 9 SAPSACASPTQAGSLLTAGFLALGTFAIGTEGFMIAPLLPRMAADFGMSVPMVASLVVIF 68 Query: 130 GVVAAISAPGLMLGAGRINRRFILLMLSVLLLASNLVSAFAPSFGVMLLGRALLGAALGG 189 +V A+S+P + + +NRR +L+ A+NL++A + SF +L+ R L+ A G Sbjct: 69 TLVLALSSPISTVLSAAMNRRRVLIAAMTAFTAANLLAACSSSFTGLLVARLLMAVAAGL 128 Query: 190 FWTLALATAGRLVRQEHAAKATAMILSGVTFATVIGVPLGTFISGLSSWRASFIATGILA 249 + A A AG +V +A A++ G+T + +G+PLG + WRA+F+A + Sbjct: 129 YTPNASALAGAMVAPGQRGRALAIVSGGMTSPSALGLPLGAVVGHAFGWRATFLAVSAMG 188 Query: 250 ALALAAQTLLLPSLPSKAAIR-----FRDLTTLVSRRNPRKSLLMVALVFGAHFSSYTYI 304 A+ALA +L +P +A R+ ++ + ++ L + L +++Y YI Sbjct: 189 AVALAG---ILLGVPRQAGAHLHVAGLRERMAVIGQPQVQRLLAVTLLWSVGAYAAYPYI 245 Query: 305 APFL------GQNGFSLTL 317 AP+L G++ SLT+ Sbjct: 246 APYLSHVLSFGESRISLTV 264 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,182,522 Number of extensions: 41419 Number of successful extensions: 304 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 10 Length of query: 467 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 378 Effective length of database: 1,198,455 Effective search space: 453015990 Effective search space used: 453015990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)