BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0102.0066.p (361 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis pro... 485 e-138 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 79 8e-16 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 76 5e-15 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 74 2e-14 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 73 4e-14 >gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 485 bits (1248), Expect = e-138, Method: Compositional matrix adjust. Identities = 235/304 (77%), Positives = 267/304 (87%) Query: 1 LLALNAAIEAARAGEHGRGFAVVAGEVRQLAQRTKEATDDIGAMVRSITEEAERASGGMQ 60 LLALNAAIEAARAGE GRGFAVVAGEVRQLAQRTKEATDDIG MVR+ITEEAERA+ GM Sbjct: 202 LLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATDDIGTMVRAITEEAERAASGMN 261 Query: 61 ALSTKVLEASQNVERVHGFLGNIERSAGISEEEIQQIARASREHVETTHRIAEAILKIRD 120 +LS++VLEA+QNVE+VHG L +IERSA S+E+I++IA ASREHV+TT IA+AI IR+ Sbjct: 262 SLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIAVASREHVQTTQEIADAITDIRN 321 Query: 121 GMLATDIELPRVAASAMALSERAELVYDAIAASNAKTQHDDIQKVATAAAKRIGKLFEEA 180 GML TD ELPRVAASAM LSERAE V++AI A+ HDDI+ A AA +GKLFEE+ Sbjct: 322 GMLQTDTELPRVAASAMQLSERAEAVFEAIVEGGARGGHDDIRIAAADAAAAVGKLFEES 381 Query: 181 ISAGRISEGALFDRTYKPLPNTNPPKHTTQFDAFTDRVLPDVQEAILDAMPQLAYAGAVD 240 I AG I+E ALFDR YKP+PNT+P KH++QFDAFTDRVLP +QEA+L+ MPQLAYAGAVD Sbjct: 382 IRAGVITEAALFDRHYKPIPNTSPQKHSSQFDAFTDRVLPAIQEALLERMPQLAYAGAVD 441 Query: 241 NNGYFPTHNKKFSKPLTGDYDTDLVNNRTKRIFSDRTGKRCGANTKPFLLQTYKRDTGEV 300 NNGYFPTHNKKFS+PLTG+YD DLVNNRTKRIFSDRTGKRCG+NTKPFLLQTYKRDTGEV Sbjct: 442 NNGYFPTHNKKFSQPLTGNYDVDLVNNRTKRIFSDRTGKRCGSNTKPFLLQTYKRDTGEV 501 Query: 301 MHDL 304 MHDL Sbjct: 502 MHDL 505 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 66/110 (60%) Query: 1 LLALNAAIEAARAGEHGRGFAVVAGEVRQLAQRTKEATDDIGAMVRSITEEAERASGGMQ 60 +LALNAA+EAARAGE GRGFAVVA EVR LAQR+ A +I ++ + ++ SG +Q Sbjct: 375 ILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSVQQVGLGSGLVQ 434 Query: 61 ALSTKVLEASQNVERVHGFLGNIERSAGISEEEIQQIARASREHVETTHR 110 + E +V+RV + I ++G + I+Q+ +A + E T + Sbjct: 435 KAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQ 484 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 65/110 (59%) Query: 1 LLALNAAIEAARAGEHGRGFAVVAGEVRQLAQRTKEATDDIGAMVRSITEEAERASGGMQ 60 +LALNAA+EAARAGE GRGFAVVA EVR LAQR+ A +I +++ E+ E S ++ Sbjct: 375 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQLVE 434 Query: 61 ALSTKVLEASQNVERVHGFLGNIERSAGISEEEIQQIARASREHVETTHR 110 + E +V+RV +G I ++ I+Q+ RA + E T + Sbjct: 435 QAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQ 484 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 65/110 (59%) Query: 1 LLALNAAIEAARAGEHGRGFAVVAGEVRQLAQRTKEATDDIGAMVRSITEEAERASGGMQ 60 +LALNAA+EAARAGE GRGFAVVA EVR LAQR+ A +I +++ + E E S + Sbjct: 374 ILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASVERVESGSRLVG 433 Query: 61 ALSTKVLEASQNVERVHGFLGNIERSAGISEEEIQQIARASREHVETTHR 110 + E +V+RV + I ++G + I+QI +A + E T + Sbjct: 434 QAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 483 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 63/110 (57%) Query: 1 LLALNAAIEAARAGEHGRGFAVVAGEVRQLAQRTKEATDDIGAMVRSITEEAERASGGMQ 60 +LALNAA+EAARAGE GRGFAVVA EVR LAQR+ A +I ++ + + S ++ Sbjct: 374 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVE 433 Query: 61 ALSTKVLEASQNVERVHGFLGNIERSAGISEEEIQQIARASREHVETTHR 110 + E Q+V RV +G I ++ E I+Q+ A + E T + Sbjct: 434 RAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQ 483 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 959,348 Number of extensions: 35699 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 69 Length of query: 361 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 275 Effective length of database: 1,212,660 Effective search space: 333481500 Effective search space used: 333481500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)