BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0102.0064.p (200 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspiril... 365 e-102 gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamida... 313 4e-87 >gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 365 bits (936), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/201 (87%), Positives = 187/201 (93%), Gaps = 1/201 (0%) Query: 1 MSQGQDQFASNVYYDRTFDCDAAKILPGEYYFTHKDMMIVTVLGSCVSACIRDRVTGIGG 60 MSQ +Q ASN+YYDRTFDCDAAKILPGEYYFT KDMMIVTVLGSCVSACIRDRV+GIGG Sbjct: 1 MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG 60 Query: 61 MNHFMLPDSGDGD-SPISASMRYGTYAMEILINDVLKAGARRENLEAKVFGGGNVLRGFI 119 MNHFMLPD G D SP+SAS RYGTYAME+LINDVLK+GARRENLEAKVFGGGNVLRGF Sbjct: 61 MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFS 120 Query: 120 AINVGERNAQFVRDYLKAENIRVVAEDLNDIWPRKVYFFPRTGKVLVKKLKQLHNNTLVN 179 AINVGERNA+FVR YLKAENIRVVAEDLNDI+PRKVYFFPRTGKVLVKKLKQ+HNNTLV+ Sbjct: 121 AINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVD 180 Query: 180 REQDYASKLVAKPVGGAVDLF 200 RE+ YASKLV KPVGG VDLF Sbjct: 181 REKAYASKLVTKPVGGEVDLF 201 >gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamidase [Herbaspirillum seropedicae SmR1] Length = 203 Score = 313 bits (803), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 150/196 (76%), Positives = 172/196 (87%), Gaps = 2/196 (1%) Query: 6 DQFASNVYYDRTFDCDAAKILPGEYYFTHKDMMIVTVLGSCVSACIRDRVTGIGGMNHFM 65 + FAS VY+DR FDC AKILPGEY++T +DMMIVTVLGSCVSAC+RDRV+G+GGMNHFM Sbjct: 9 ENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFM 68 Query: 66 LPDSG-DGDSPISASMRYGTYAMEILINDVLKAGARRENLEAKVFGGGNVLRGFIAINVG 124 LPD G + DSP+SASMRYGTYAME+LINDVLKAGARRENLE KVFGGG VLRG A+NVG Sbjct: 69 LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVG 128 Query: 125 ERNAQFVRDYLKAENIRVVAEDLNDIWPRKVYFFPRTGKVLVKKLKQLHNNTLVNREQDY 184 ERNA FVR +L AE IRVVAEDLNDIWPRKV+FFPRTGKVLVKK+K+ + L +RE++Y Sbjct: 129 ERNAAFVRSFLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKEAGAD-LTSREREY 187 Query: 185 ASKLVAKPVGGAVDLF 200 AS+L AKPVGG +DLF Sbjct: 188 ASRLQAKPVGGEIDLF 203 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 593,375 Number of extensions: 22166 Number of successful extensions: 51 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 2 Length of query: 200 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 119 Effective length of database: 1,236,335 Effective search space: 147123865 Effective search space used: 147123865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)