BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0063.p
         (96 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311336|ref|YP_003775428.1| chemotaxis protein methyltransf...   185   7e-49
gi|300309960|ref|YP_003774052.1| chemotaxis protein methyltransf...    59   8e-11
gi|300312324|ref|YP_003776416.1| methyltransferase of chemotaxis...    54   2e-09

>gi|300311336|ref|YP_003775428.1| chemotaxis protein
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  185 bits (469), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/94 (94%), Positives = 91/94 (96%), Gaps = 1/94 (1%)

Query: 1   VRPELRKLVTFKQLNLLADGWPLTGQFDVIFCRNVMIYFDKPTQSKILSRFVPLMKPHAL 60
           VRPELRKL+TFKQLNLLADGWPL+GQFDVIFCRNVMIYFDKPTQSKILSRFVPLMKPHAL
Sbjct: 194 VRPELRKLITFKQLNLLADGWPLSGQFDVIFCRNVMIYFDKPTQSKILSRFVPLMKPHAL 253

Query: 61  LFAGHSENFLYVSDALKLKGKTVYELGAATQRKA 94
           LFAGHSENFLYVSDALKLKGKTVYEL  ATQR A
Sbjct: 254 LFAGHSENFLYVSDALKLKGKTVYELN-ATQRGA 286


>gi|300309960|ref|YP_003774052.1| chemotaxis protein
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score = 58.9 bits (141), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 1   VRPELRKLVTFKQLNLLADGWPLTGQFDVIFCRNVMIYFDKPTQSKILSRFVPLMKPHAL 60
           V+ +LR  V F Q NL        GQ+D+IF RNV+IYFD  T+ ++L   +  ++P   
Sbjct: 190 VQADLRAKVQFAQRNLTRLDEHDDGQYDLIFLRNVIIYFDCETKLQVLRDVIARLRPGGY 249

Query: 61  LFAGHSENFLYVSDALKLKGKTVY 84
           L  GHSE+   +   L ++  ++Y
Sbjct: 250 LVVGHSESLHGMDLGLDMQSPSIY 273


>gi|300312324|ref|YP_003776416.1| methyltransferase of chemotaxis
           proteins protein [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score = 54.3 bits (129), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 5   LRKLVTFKQLNLLADGWPLTGQ-FDVIFCRNVMIYFDKPTQSKILSRFVPLMKPHALLFA 63
           +R  V F   NLLA  +    Q +D IFCRNV+IYF++  Q +++     +MKP AL+F 
Sbjct: 177 IRSQVRFAPGNLLAPDFLRHSQPYDFIFCRNVLIYFERDVQRQVVQLLASVMKPDALIFV 236

Query: 64  GHSENFLYVSDALKLKG 80
           G +E  + +   ++  G
Sbjct: 237 GPAEGGILLGPTMESAG 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 276,878
Number of extensions: 9218
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 1,619,870
Length adjustment: 65
Effective length of query: 31
Effective length of database: 1,312,095
Effective search space: 40674945
Effective search space used: 40674945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)