BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0061.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311338|ref|YP_003775430.1| chemotaxis-specific methylester...   196   1e-51
gi|300311029|ref|YP_003775121.1| protein-glutamate methylesteras...    96   4e-21
gi|300309961|ref|YP_003774053.1| chemotaxis-specific methylester...    78   6e-16

>gi|300311338|ref|YP_003775430.1| chemotaxis-specific methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  196 bits (499), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/99 (96%), Positives = 98/99 (98%)

Query: 1   MEVVGVAPDPIIARDLIKQTNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTER 60
           MEVVGVAPDPIIAR+LIKQTNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTER
Sbjct: 28  MEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTER 87

Query: 61  GSEITLRALELGAVDFVTKPKISIQSGMQEYTDMIADKI 99
           GSEITLRALELGA+DFVTKPKISIQSGMQEY DMIADKI
Sbjct: 88  GSEITLRALELGAIDFVTKPKISIQSGMQEYADMIADKI 126


>gi|300311029|ref|YP_003775121.1| protein-glutamate methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 65/99 (65%)

Query: 13  ARDLIKQTNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGSEITLRALELG 72
           A +L +   PDV+TLD+ MP MDGL  L  +M  RP+PVVMVSSLTE+G+  T  A+ LG
Sbjct: 38  AVELNRSFAPDVVTLDINMPEMDGLSALSLMMLDRPVPVVMVSSLTEQGALATFEAMNLG 97

Query: 73  AVDFVTKPKISIQSGMQEYTDMIADKIRAASKASIRPRA 111
           AVD+V KP  +I   + E    +  K+R A+KA IR RA
Sbjct: 98  AVDYVAKPSGTISLSLHEIEQDLLAKVRVAAKARIRSRA 136


>gi|300309961|ref|YP_003774053.1| chemotaxis-specific methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score = 78.2 bits (191), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 67/105 (63%)

Query: 1   MEVVGVAPDPIIARDLIKQTNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTER 60
           + V+G APDP+ A   ++Q  PDV+ LD++MPRMDG+ FL ++M  RP PV+M S+    
Sbjct: 32  IRVIGTAPDPVFALRKMQQQWPDVIVLDIKMPRMDGVSFLRQIMATRPTPVIMCSAHVGP 91

Query: 61  GSEITLRALELGAVDFVTKPKISIQSGMQEYTDMIADKIRAASKA 105
            + +   AL  GAV  + +P++ ++  +Q+  + +A  IRAA +A
Sbjct: 92  DNALAAEALAAGAVSVIARPQLGVRDFLQQAVEELASAIRAAMQA 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,145
Number of extensions: 26206
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 3
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)