BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0102.0059.p (115 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 229 4e-62 gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 144 2e-36 gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 138 1e-34 gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 135 7e-34 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 91 2e-20 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 229 bits (584), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 112/115 (97%), Positives = 113/115 (98%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRSDQFDFVVSDWNMPNMDGLTMLQEIRKDP 60 MRRIVRNLLKELGYTNVDEAEDGVQ LQKLRSDQFDFVVSDWNMPNMDGLTMLQEIRKDP Sbjct: 17 MRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLTMLQEIRKDP 76 Query: 61 ALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEKLEAGG 115 ALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEK+ AGG Sbjct: 77 ALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEKMAAGG 131 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 144 bits (362), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 2/112 (1%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRS--DQFDFVVSDWNMPNMDGLTMLQEIRK 58 MRRIV LLKEL YT + EA+DG L+ L S FV++DWNMP MDGLT+L++IR Sbjct: 17 MRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDWNMPVMDGLTLLKKIRS 76 Query: 59 DPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEK 110 PALS LPVLM+TAEAKKENIV AAQ GA+GY+VKPF A TL EK+ KI + Sbjct: 77 TPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKEKIEKILAR 128 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 138 bits (348), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 67/112 (59%), Positives = 86/112 (76%), Gaps = 2/112 (1%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRSDQF--DFVVSDWNMPNMDGLTMLQEIRK 58 MRRIV LLKEL YT + EA+DG L+ L + FV++DWNMP MDGLT+L++IR Sbjct: 17 MRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDWNMPVMDGLTLLKKIRA 76 Query: 59 DPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEK 110 P+++ LPVLM+TAEAKKENIV AAQ+GA+GY+VKPF AATL +K+ KI + Sbjct: 77 TPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKDKIEKILAR 128 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 135 bits (341), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 66/117 (56%), Positives = 86/117 (73%), Gaps = 2/117 (1%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRSDQF--DFVVSDWNMPNMDGLTMLQEIRK 58 MRRI+ LLKEL Y V +A+DG + L S FV++DWNMP MDGL +L++IR+ Sbjct: 16 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNMPGMDGLGLLKKIRE 75 Query: 59 DPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEKLEAGG 115 P L +LPVLMV+AEAKKENIV AA+ GA+GY+VKPF AATLD+K+ KI ++ + G Sbjct: 76 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKILQRRSSMG 132 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 90.9 bits (224), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 1/108 (0%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRSDQFDFVVSDWNMPNMDGLTMLQEIRKDP 60 +R++V LK GY NV EA DGV L+K +S FD V++D NMP MDGLT+++ +R+ Sbjct: 14 LRQMVVFSLKAAGY-NVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELT 72 Query: 61 ALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 108 + +++P+LM+T E E AGANG++VKPF L E + K+ Sbjct: 73 SYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 328,928 Number of extensions: 11399 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 29 Length of query: 115 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 42 Effective length of database: 1,274,215 Effective search space: 53517030 Effective search space used: 53517030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)