BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0055.p
         (367 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB tra...   489   e-139
gi|300310132|ref|YP_003774224.1| type III secretion HrcU transme...   144   9e-36

>gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  489 bits (1260), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/348 (69%), Positives = 291/348 (83%)

Query: 1   VPRSREMATCVMLLIGGSTLWMFTGPLVTSLNRFMVSTMTFEREMAFDPALLFERMSGHF 60
           VPRSRE+ATC++LL+GGS +WMF+GP+VTSL+R MV+ M+ ER   +DP +L   +S   
Sbjct: 27  VPRSRELATCLVLLVGGSCVWMFSGPVVTSLDRIMVAMMSLERAAIYDPVVLMNLISARC 86

Query: 61  MEVAVACIPIAFLMTLAAVASPLILGGWLFNGSSLEPKFDRLNPMKGIMNLFSLNSLVEL 120
           ++VA+A IP+AFLMTLAA+A+PL LGGWLFN SSL PKF +LNP+ G  N+FS+NSLVEL
Sbjct: 87  LDVAIAVIPLAFLMTLAAMAAPLTLGGWLFNVSSLAPKFSKLNPISGFANMFSVNSLVEL 146

Query: 121 GKGILKSVLVGVIAWFAMRSHIDAVLNLSVEPLKVASSHMPNLLWTCFIMMVCALIVIAV 180
           GK +LK++LVG +AW  +RS +DAV+ L VE LK A +H   LLW  FI MV ALI IAV
Sbjct: 147 GKAVLKTLLVGTVAWVTIRSQLDAVMGLGVESLKTAGAHAAQLLWISFITMVSALIFIAV 206

Query: 181 IDVPYQLWNYTRKLKMTRQEVKQEHKESDGDPLIKGKIRALQRAAARRRMMSSVPTADVV 240
           +DVPYQLWNY RKL+MTR+EVKQEHKES+GDP IKGKIRA+QRA ARRRMM+ VPTADVV
Sbjct: 207 LDVPYQLWNYGRKLRMTREEVKQEHKESEGDPHIKGKIRAMQRAMARRRMMAEVPTADVV 266

Query: 241 VTNPTHFAVALKYSEGGMSAPQVVAKGTEAVAANIRKIAAENNVPILEAPPLARALHYHT 300
           VTNPTH+AVALKYSEG M AP+VVAKG++ +AA IR++A E+ VP+LEAPPLARALH HT
Sbjct: 267 VTNPTHYAVALKYSEGKMGAPKVVAKGSDEIAAKIRELAREHRVPLLEAPPLARALHTHT 326

Query: 301 EIGDEIPESLYTAVAEVLAYVFQLRTYNSNGGVRPDEPSELEVPKELD 348
           EIGDEIPE+LYTAVAEVLAYVFQLRTY   GG RP EP+ LEVPKELD
Sbjct: 327 EIGDEIPEALYTAVAEVLAYVFQLRTYGQFGGTRPVEPTGLEVPKELD 374


>gi|300310132|ref|YP_003774224.1| type III secretion HrcU
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  144 bits (364), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 142/270 (52%)

Query: 55  RMSGHFMEVAVACIPIAFLMTLAAVASPLILGGWLFNGSSLEPKFDRLNPMKGIMNLFSL 114
           +++   + +AVA   +  +  LAAV       G L    +LEPK D+LNP+ GI  +FS 
Sbjct: 75  QLTAALILLAVAFFAVLVICPLAAVVGHWGQFGMLIATEALEPKLDKLNPVNGIKQIFSK 134

Query: 115 NSLVELGKGILKSVLVGVIAWFAMRSHIDAVLNLSVEPLKVASSHMPNLLWTCFIMMVCA 174
             LVEL   + K+ L+  + + A+ S + A+  L+    K        LL   F +++  
Sbjct: 135 KKLVELFITVGKAALIAGMMYSAIHSQLGAIFTLAGGEPKDVYEAFVTLLRNIFHLIIVV 194

Query: 175 LIVIAVIDVPYQLWNYTRKLKMTRQEVKQEHKESDGDPLIKGKIRALQRAAARRRMMSSV 234
            +V+ VID   Q + + + L M ++E+K+E KES+GDP++KG+ + L R  A     +  
Sbjct: 195 CLVLGVIDYAVQKYFHKKDLMMDQEEIKREFKESEGDPMVKGQRKQLARQWANEAPAAKT 254

Query: 235 PTADVVVTNPTHFAVALKYSEGGMSAPQVVAKGTEAVAANIRKIAAENNVPILEAPPLAR 294
             A+ VV NPTHFAVA+ Y       P V+AKG + +A  +   A    +P++    LAR
Sbjct: 255 EKANAVVVNPTHFAVAMFYDADEAMVPLVLAKGRDEIAQAMIARAHACGIPVIRHVWLAR 314

Query: 295 ALHYHTEIGDEIPESLYTAVAEVLAYVFQL 324
            L+   +    +P S Y AVA+V A V +L
Sbjct: 315 TLYATCQDDMPVPRSSYQAVAQVYAVVHEL 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,033,903
Number of extensions: 39273
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,207,925
Effective search space: 338219000
Effective search space used: 338219000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)