BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0053.p
         (406 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-bind...   605   e-174
gi|300313432|ref|YP_003777524.1| signal recognition particle GTP...    58   1e-09

>gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  605 bits (1561), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/340 (85%), Positives = 314/340 (92%), Gaps = 2/340 (0%)

Query: 67  RPQQAGVMAEFDGKDYDEILSDVMTEIRSMRGVLETQLAEISWGGTQKREPAKAAIMREM 126
           RP+ A  + EFDGKDYDEILS+VM+EIRSMRGVLETQLAEISWGGTQKREP K  +++EM
Sbjct: 157 RPRSA--LPEFDGKDYDEILSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEM 214

Query: 127 LAAGFSASLSRLITENLPQSPKSQDAMFWVKSVLAKNLMTMANENELLEEGGVYALVGPT 186
           LAAGFSASLSRLITENLP + KSQD MFWVKSVLA+NL T+ANENELLE GGV+A+VGPT
Sbjct: 215 LAAGFSASLSRLITENLPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPT 274

Query: 187 GVGKTTTTAKLAARCVMRHGPGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDESDL 246
           GVGKTTTTAKLAARCVMRHG GKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE+DL
Sbjct: 275 GVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDL 334

Query: 247 RIALDELRGKHTVLIDTAGMGQRDQMVAEQAAMLSGAGTDIKRLLCLNATATGGTLNEVV 306
           RIAL+EL+GKHTVLIDTAG+GQRDQMVAEQ AML+GAG DIKRLLCLNATATGGTLNEVV
Sbjct: 335 RIALEELKGKHTVLIDTAGVGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVV 394

Query: 307 SAYSGDGLAGCIITKLDEAATIGNVLDVVIRQKLNLYYVANGQRVPEDLHVANRLYLADR 366
            AYS  GLAGCIITKLDEAATIGNVLDVVIR KLNL+YVANGQRVPEDLHVAN+LYLADR
Sbjct: 395 HAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADR 454

Query: 367 AFKLKRETAPFEFQDAELPVVVGPTATAMNDKSLREVILG 406
           AFK KRETAPFEFQ+ ELP V+GPTA +MNDK LREV  G
Sbjct: 455 AFKQKRETAPFEFQEGELPGVIGPTAMSMNDKGLREVSFG 494


>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase
           involved in cell division protein [Herbaspirillum
           seropedicae SmR1]
          Length = 321

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 18/200 (9%)

Query: 179 VYALVGPTGVGKTTTTAKLAARCVMRHGPGKLALITTDGYRIGGYEQLRIYGKILGVMVH 238
           V  + G  G GKTTT  KLA   +  HG   L L   D +R    EQL ++G+   V V 
Sbjct: 123 VMMIAGVNGAGKTTTIGKLALH-LQAHGQSVL-LAAGDTFRAAAREQLAVWGERNNVQVI 180

Query: 239 SVKDESDLRIALDEL-----RGKHTVLIDTAG--------MGQRDQMVAEQAAMLSGAGT 285
           + +      +A D +     RG H V++DTAG        M +  ++       +  A  
Sbjct: 181 AQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPH 240

Query: 286 DIKRLLCLNATATGGTLNEVVSAYSGDGLAGCIITKLDEAATIGNVLDVVIRQKLNLYYV 345
           ++  LL ++       L +V +     GL G ++TKLD  A  G +  +   + + LY++
Sbjct: 241 EV--LLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFI 298

Query: 346 ANGQRVPEDLHVANRLYLAD 365
             G+++ EDL   N     D
Sbjct: 299 GVGEQI-EDLQAFNATEFVD 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,143,466
Number of extensions: 43981
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,207,925
Effective search space: 385328075
Effective search space used: 385328075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)