BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0052.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311344|ref|YP_003775436.1| antiactivator of flagellar bios...   336   1e-93

>gi|300311344|ref|YP_003775436.1| antiactivator of flagellar
           biosynthesis FleN protein [Herbaspirillum seropedicae
           SmR1]
          Length = 266

 Score =  336 bits (861), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 161/266 (60%), Positives = 218/266 (81%), Gaps = 1/266 (0%)

Query: 1   MLERPTPRVFTFFSVLPDEEKGAMLINLAASLAAADHNALLVDACMTPSVILSRFG-GVA 59
           MLERP PR+FTFFSVL +E+K AMLINLAASLA A H+ L++D  +  + +L+R G    
Sbjct: 1   MLERPVPRLFTFFSVLAEEDKSAMLINLAASLAQAKHSVLVIDGDVATTGLLTRIGLRHD 60

Query: 60  VATLLDVARQERQLDEAVRMVPEGFALARLSRKNVSASTHPQASRLAQIFDGLTEESDIT 119
           VATL +VAR ER   EA RM+PEGF++AR++R++V +++ PQA +LA+IFD L E+++IT
Sbjct: 61  VATLQEVARMERAPREATRMLPEGFSMARIARRSVPSASDPQAGQLAEIFDSLIEQAEIT 120

Query: 120 LINGELNDDELLPVPAMEMGEIVVHMSTSPTSIKAAYVLLKGLSDKLGRRPFNLLVSGGS 179
           L+NG L+ D+ LPVP MEMGEIV+ +ST+ +SIKAAYVLLK LSD++GRRPF+L+V+  +
Sbjct: 121 LVNGVLSADQSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT 180

Query: 180 DADAQMVYANMAQAANRYLAAQLHFMGSIPADEHIRRASGQGRTVLEAFPLAGATLAFKR 239
           +A+A+ VYANMAQAA+RYLAAQL+++G+IPAD+HIRRA+GQGR V++ FP A A LAF+R
Sbjct: 181 EAEARTVYANMAQAASRYLAAQLNYLGAIPADDHIRRATGQGRAVMDVFPFATAALAFQR 240

Query: 240 LADQFSLSNLTKGTYGMATDGASLGV 265
           L+ +F+ +   + TYGMATDGASLGV
Sbjct: 241 LSKKFTAAESARSTYGMATDGASLGV 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 747,729
Number of extensions: 28349
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)