BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0048.p
         (276 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312289|ref|YP_003776381.1| flagellar motor component prote...    74   1e-14
gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...    61   9e-11
gi|300310091|ref|YP_003774183.1| outer membrane protein and rela...    57   1e-09

>gi|300312289|ref|YP_003776381.1| flagellar motor component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 41/280 (14%)

Query: 16  WLVSYADFITLLFAFFVVMYAISQVNEGKYKILADSLVNAFGKEPVSTAPIIVQAGGQGA 75
           W ++YADF+T + AFF++M+ +    +G    +A+     + K P+  A  +    G G 
Sbjct: 26  WKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE-----YFKTPLKVA--MAGGSGSGD 78

Query: 76  QQSAAPKITLQKPRSNEALRREKERMTDMARDIMQVLAPL-------VQEGKVRVTQ--- 125
             +  P       R +  LR+ +  +T   +++ Q    L       ++E K R+ +   
Sbjct: 79  ANTVLPGGGKDLTRQDGQLRKGETDVTARKQNLKQAQQELEKMERTRLEELKSRLEKAID 138

Query: 126 ----------------TSVGVNVEI---NANVLFAPGDAKVSKESEETLIAIARVLKNDD 166
                           TS G+ ++I       +FA   A++   ++E L  I R L +  
Sbjct: 139 SNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTKEILHEIGRTLNDVP 198

Query: 167 HAIQIEGHTDNTQISTS-VFPSNWELSAVRASTVARLFSNQGIAELRLTAVGHGSNQAVA 225
           + I + GHTD T  S      SNWELSA RA+   R     G+ E ++  V   S+  + 
Sbjct: 199 NKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGGMDESKVLRVVGLSSAVLL 258

Query: 226 SNDTPEGRLRNRRVDVMILSRLAEQATEVPFADQGDKTVP 265
             + P   + NRR+ ++++++ AE+  E    D G   VP
Sbjct: 259 DKEDPFNPI-NRRISIIVMNKKAEEMVE---KDSGSLNVP 294


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 73  QGAQQSAAPKITLQKPRSNEALRREKERMTDMARDIMQVLAPLVQEGKVRVTQTSVGV-- 130
           QG  +     +++    S+EA R++    +DMA  +    + ++  G +RV+ +  GV  
Sbjct: 101 QGQLKIDGTNVSISGEVSHEAQRQQIA--SDMATSLNS--SYIINNG-LRVSTSEQGVLD 155

Query: 131 NVEINANVLFAPGDAKVSKESEETLIAIA-RVLKNDDHAIQIEGHTDNTQISTSVFPSNW 189
           N   N  V F  G A ++ E +  L  IA  +L+     ++I G+TDN  +  S    N 
Sbjct: 156 NTLANRVVSFESGRATLTPEGKRILDEIAATMLQLKGRRVEIIGNTDNEGLRAS----NI 211

Query: 190 ELSAVRASTVARLFSNQGIAELRLTAVGHGSNQAVASNDTPEGRLRNRRVDVMI 243
            LS  RA  V    S +G+ +  LT  G G ++ VASN T EGR RNRR++  I
Sbjct: 212 SLSLARADAVKAYLSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIEFRI 265


>gi|300310091|ref|YP_003774183.1| outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Herbaspirillum
           seropedicae SmR1]
          Length = 271

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 90  SNEALRREKERMTDMARDIMQVLAPLVQEGKVRVTQTSVGV--NVEINANVLFAPGDAKV 147
           +NEA R++    +DMA  +    +  V  G +RV+ +  G+  N   N  V F  G A +
Sbjct: 122 ANEAQRQQI--ASDMASSLNS--SYTVNNG-LRVSTSEQGLLDNALANRVVSFESGQATL 176

Query: 148 SKESEETLIAIA-RVLKNDDHAIQIEGHTDNTQISTSVFPSNWELSAVRASTVARLFSNQ 206
           + E +  L  IA  +LK     ++I G+TDN  +  S    N  LS  RA  V      +
Sbjct: 177 TPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRAS----NISLSLARADAVKAYLGAK 232

Query: 207 GIAELRLTAVGHGSNQAVASNDTPEGRLRNRRVDVMI 243
           G+ E  L+  G G ++ VASN T EGR +NRR++  I
Sbjct: 233 GVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEFRI 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 682,663
Number of extensions: 22896
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 4
Length of query: 276
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,222,130
Effective search space: 234648960
Effective search space used: 234648960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)