BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0042.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311351|ref|YP_003775443.1| flagellar basal-body rod modifi...   327   4e-91

>gi|300311351|ref|YP_003775443.1| flagellar basal-body rod
           modification protein [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  327 bits (839), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/241 (72%), Positives = 209/241 (86%), Gaps = 3/241 (1%)

Query: 1   MTTVSNDLLSAVNGSSTSNSNTSS--LNDNSPEAIQNRFLKLLTVQMQNQDPTNPMDNSQ 58
           M TVSNDLL+A+NG+S+S+S ++S  L DNSP+AIQNRFL LL  QM+NQDP NPMDNSQ
Sbjct: 1   MATVSNDLLTAMNGTSSSSSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNSQ 60

Query: 59  LTTQLAQLSTVSGISQLNTTLASLMSNLGTSQSLQAANMIGHSVLAPGNNLTLTSDTTKA 118
           LT+Q+AQLSTVSGISQLN+TLA+LM NL +SQ+L +ANMIGHSVLAPGN++ LTS+TTK 
Sbjct: 61  LTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTKD 120

Query: 119 ADGTETTTQKAVFGVQLGANADSIKVTIRDATTGAVVRQMDLGSQAAGTVPVIWDGTNDA 178
           A G + T Q AV GV L  NA S+ VT++D +TGAVVR MDLG+QA+G VPVIWDGTNDA
Sbjct: 121 ASGNDVTKQHAVMGVNLATNASSVVVTVKD-STGAVVRTMDLGTQASGVVPVIWDGTNDA 179

Query: 179 GTKAADGQYTFTVAATSGGTAVDAAALSFGTVASVSTGADGVKLNVSNIGSIKPTDVIQI 238
           G+KAADG YTF+VAA++ GTAV+A AL+FGTVASVST ADG+KLNVSNIG+IKPTDV+QI
Sbjct: 180 GSKAADGNYTFSVAASNNGTAVNATALAFGTVASVSTAADGIKLNVSNIGTIKPTDVVQI 239

Query: 239 L 239
           L
Sbjct: 240 L 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.120    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 538,282
Number of extensions: 18737
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 129 (54.3 bits)