BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0040.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311353|ref|YP_003775445.1| flagellar basal body rod protei...   399   e-112
gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protei...    86   4e-18

>gi|300311353|ref|YP_003775445.1| flagellar basal body rod protein
           FlgF [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  399 bits (1025), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/247 (79%), Positives = 223/247 (90%), Gaps = 2/247 (0%)

Query: 21  MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTFRAVPVVGGEGLATRTFVVD 80
           MDR++YTAMSGAKHT+EQQATASNNLANATTTGFR+QL+TFRA PVVG +GL TRTFVVD
Sbjct: 1   MDRLVYTAMSGAKHTLEQQATASNNLANATTTGFRAQLNTFRAAPVVG-DGLPTRTFVVD 59

Query: 81  STAGTNFAFGPIQDTGRALDVAVAGEGWIAVQTADGGEAYTRNGSFKMSENGILQTQTGL 140
           STAG +F+ GPIQDTGRALDVA+ G GWIAVQTADGGEAYTRNGSFK++ENGILQTQ+G 
Sbjct: 60  STAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQSGQ 119

Query: 141 SVLGDGGPISIPPDVTVAIAPDGTVSSIPTMGTPNAVNVLGRIKMVNPDEKSLKRGDDGL 200
           +VLGDGGPI+IPPD TVAIA DGTVS+IPT G PNAVNVLGRIK+VNPDEK++KRGDDGL
Sbjct: 120 TVLGDGGPITIPPDATVAIAADGTVSAIPTNGIPNAVNVLGRIKLVNPDEKNMKRGDDGL 179

Query: 201 FRLTAGTQAPPDANVRLVGGALEGSNVNVVDSMVNMINLARQFDLNMKVVTTAQSDADKA 260
           FR   G  A PDANVRL  GALEGSNVNVV++MVNMINL+RQF++NMK++ TA+SDA KA
Sbjct: 180 FRTITGA-AQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKMIQTAESDATKA 238

Query: 261 NQILSLS 267
             ILSLS
Sbjct: 239 TSILSLS 245


>gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protein
           FlgG [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 122/267 (45%), Gaps = 31/267 (11%)

Query: 21  MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTF-----RAVPVVGGE----- 70
           M R ++ + +G      Q    SNNLAN +T GF+     F     + V   G +     
Sbjct: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60

Query: 71  ----GLATRTFVVDSTAGTNFAFGPIQDTGRALDVAVAGEGWIAVQTADGGEAYTRNGSF 126
               GL   T V        F  G +  T    D+A+ G G+  +   DG  AYTR+G+F
Sbjct: 61  QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120

Query: 127 KMSENGILQTQTGLSVLGDGGPISIPPDVT-VAIAPDGTVSSIPTMGTPNAVNVLGRIK- 184
           +    G L T +G ++     PI++P + T + +  DG VS +    T  A   +G I+ 
Sbjct: 121 QTDSQGQLVTSSGYTL---QPPITVPLNTTKLTVGRDGVVSIMQAGST--ATTQIGTIQV 175

Query: 185 --MVNPDEKSLKRGDDGLFRLTAGTQAPPDANV------RLVGGALEGSNVNVVDSMVNM 236
              +NP    L+   + L+  TA + AP   N        L  G +E SNVNVV+ +VNM
Sbjct: 176 ATFINP--AGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNM 233

Query: 237 INLARQFDLNMKVVTTAQSDADKANQI 263
           I   R +++N K +TT+     K +Q+
Sbjct: 234 IQTQRAYEINSKAITTSDQMLAKLSQL 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 735,225
Number of extensions: 31168
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)