BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0037.p
         (83 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring pro...   158   9e-41
gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring pro...    52   1e-08

>gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  158 bits (399), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 75/83 (90%), Positives = 81/83 (97%)

Query: 1   VTVIEVMPNGNMVVSGEKQVALDKGVEYVRFSGTVSPDNIATGNTVSSTLVADAKVEYRT 60
           VTV+EV+PNGN+VV+GEKQVALDKGVEYVRFSGTVSPDNI TGNTVSSTLVADAKVEYRT
Sbjct: 137 VTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGNTVSSTLVADAKVEYRT 196

Query: 61  NTRVDMAEFMSSLSRFFFSVSPF 83
           NTRVDMA+FMSSL RFFFS+SPF
Sbjct: 197 NTRVDMADFMSSLGRFFFSISPF 219


>gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 52.0 bits (123), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 1   VTVIEVMPNGNMVVSGEKQVALDKGVEYVRFSGTVSPDNIATGNTVSSTLVADAKVE 57
           V+++EV+PN N+VV+GEK++ ++  +  +RFSG V   +I  G  V+S+ VADA++E
Sbjct: 142 VSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRDI-RGGIVASSNVADARLE 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 215,851
Number of extensions: 6499
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 83
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 29
Effective length of database: 1,364,180
Effective search space: 39561220
Effective search space used: 39561220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)