BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0036.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311356|ref|YP_003775448.1| flagellar basal-body P-ring pro...   501   e-143

>gi|300311356|ref|YP_003775448.1| flagellar basal-body P-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  501 bits (1291), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/347 (75%), Positives = 284/347 (81%), Gaps = 44/347 (12%)

Query: 33  ERLKDLASIQGVRQNQLVGYGLAVGLDGSGDQTTQTPFTVQSVISMLQQLGVNLPSTSTS 92
           ERLKDLASIQGVRQNQLVGYGL VGLDGSGDQTTQTPFTVQSVISMLQQLGVN+P+ ++S
Sbjct: 30  ERLKDLASIQGVRQNQLVGYGLVVGLDGSGDQTTQTPFTVQSVISMLQQLGVNVPTGTSS 89

Query: 93  NMQLKNVAAVMVTTSLPAFAQPGQTLDVTVSSIGNAKSIRGGTLLMAPLKGADGQIYAIA 152
           NMQLKNVAA MVT +LPAFAQPGQ +DVTVSSIGNAKSIRGGTLLMAPLKGADGQIYAIA
Sbjct: 90  NMQLKNVAAAMVTANLPAFAQPGQLIDVTVSSIGNAKSIRGGTLLMAPLKGADGQIYAIA 149

Query: 153 QGNIVV-----------------------GGX---------------------KNDFSTA 168
           QGNIVV                       GG                       NDFSTA
Sbjct: 150 QGNIVVGGAGGSAAGSSTVINQLSAGRISGGATVERAVPSSLGSSDMIVLELNDNDFSTA 209

Query: 169 SRVVEAVNKRFGFDTAVAQDGRVIRIRAPLGSGERVAFLGALENIDVTPSRVQAKVILNA 228
           SRVV+A+NKRFG +TAVAQDGRVIR+RAP+ SG+RVAFLGALEN+DVTP ++ AKVILNA
Sbjct: 210 SRVVDALNKRFGNETAVAQDGRVIRVRAPISSGDRVAFLGALENVDVTPGKLAAKVILNA 269

Query: 229 RTGSVVMNQAVTLDTCAVSHGNLSVVINAENSISQPGALSGGQTAANQNAQISISSAPGK 288
           RTGSVVMNQ+V LDTCAVSHGNLSVVI A+N++SQP AL+GGQTA  QNAQISI+  PGK
Sbjct: 270 RTGSVVMNQSVMLDTCAVSHGNLSVVIQADNAVSQPNALAGGQTAGVQNAQISINKEPGK 329

Query: 289 VMYLKGGASLAEVVKALNAIGATPQDLLAILQAMKAAGSLRAELEII 335
           VM LKGGASLAEVVKALNAIGATPQDLLAILQAMKAAGSLRAELE+I
Sbjct: 330 VMLLKGGASLAEVVKALNAIGATPQDLLAILQAMKAAGSLRAELEVI 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 921,221
Number of extensions: 35245
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)