BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0034.p
         (761 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311358|ref|YP_003775450.1| flagellar hook-associated FlgK ...   700   0.0  

>gi|300311358|ref|YP_003775450.1| flagellar hook-associated FlgK
           protein [Herbaspirillum seropedicae SmR1]
          Length = 778

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/785 (55%), Positives = 544/785 (69%), Gaps = 33/785 (4%)

Query: 1   MATNIFSIGQSALAAAQAAQATTSHNISNATTPGYNRQVVVQSTAGGINYGYGFIGQGTQ 60
           MATNIFSIGQSAL AA AAQATTSHNISN  TPGYNRQ VVQS+AGGINYGYGF+GQGTQ
Sbjct: 1   MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60

Query: 61  VAEIKRVYNDFLNKQVMASQTTASSLDSYLSQISQLNNLVADTSAGLSPALQDFLVXEIN 120
           V EIKRVYNDFLNKQ +ASQT+ASSLDSY S+ISQ+NN+VADT AGLSPALQDF     N
Sbjct: 61  VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120

Query: 121 SLLISSTPNNDAARQAVLSAGSTLAARFQSLNDQMAQSRTSVNAQITSSIGTINSYATQI 180
              ++S PN  A+RQ+VLS  STL AR  S+NDQ++ S  SVN+QITS++ +INS+A QI
Sbjct: 121 ---LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQI 177

Query: 181 QELNQAIIKAQGSGGGAAPNDLLDQRDQAIADLNKIVKVTTLPQNNGSLSVFIGNGQPLV 240
            +LNQAI+KA G+GGG  PNDLLDQRDQ I+ LNK+VK+TT+PQ+ GS+SVFIG GQ LV
Sbjct: 178 SQLNQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLV 237

Query: 241 LGDQVAQLVATPADDDPTRLQVSIKTSSNATILLPDGAF-TGGSLGGILQYRTETLDTAQ 299
            GD V Q+V T +  D +RLQ+        T  +PD  F  GGSLGG+L+YR+ETLD  Q
Sbjct: 238 AGDNVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQ 297

Query: 300 NTLGRVAIVLASAFNAQHKLGQDQNGALGTNFFNVPVPSVVANTKNHTVAPLAAATATIS 359
           N LGR+AI + +AFN Q KLG DQNG  GT  FNV  P+++    N         T TI+
Sbjct: 298 NALGRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGT---TNLTTTIT 354

Query: 360 NPSALTTSDYRLDFDGTNYSVTRLSDNTKTTSA--TMPVTIDGVDFG---------STNM 408
           +PSALTTSDY L +DGTNY+ TRLSDNTKT  A    PVT+DGV +          +  M
Sbjct: 355 DPSALTTSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTM 414

Query: 409 AANDSFLIKPTINGANGISVAITNTQKIAAGTPIVTSTNAITDMGL-VTTGNTGTGVVTS 467
           AA +++ I+PT NGA G S+A+ NTQ +A   PI TS NA  ++   +   NTG  ++++
Sbjct: 415 AAGNTYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISN 474

Query: 468 ATVDKTTFVPNSTQTYTYSSGTT-------SLALT---PPASVTVTTTAGVTTTYAAGAP 517
            ++D + +   S+ ++T +   +       S A T   P   VTV    G T +     P
Sbjct: 475 TSLDSSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATP 534

Query: 518 IPYSAGATISSGGVSFVLSGTPANNDKYVFSPKPGNTGTATISSGTINTNFTATSLPAGS 577
             Y +G TI+SGGV++ L+G+PA  DK+ F+P   N GTATIS+G++   +  T+ P   
Sbjct: 535 FDYKSGMTITSGGVTYALTGSPAAGDKFNFAPVSANKGTATISTGSVTPAYLTTTTPLTK 594

Query: 578 KLSFTFDSATGTLV--PSPAIGSATMGTVTVKDASGNAVAVTPPNLPFGPGYSYTTSTGM 635
             + T++S     V   SPA+  A  GT+T KD +   +A     L +  G SY  S G+
Sbjct: 595 PTTLTYNSTAAPPVFNISPAV-PAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEIS-GV 652

Query: 636 SFSITGQPANGDQFYVSPNTNGVTDNRNALALNALQTANTIGNTSFQGSYSQLVSLIGNK 695
            F+I+GQP NGDQF ++ NTN  +DNRNALA+  LQTANTI  TSFQGSYSQLV+ IGNK
Sbjct: 653 QFAISGQPGNGDQFTIAANTNAASDNRNALAMGKLQTANTINGTSFQGSYSQLVATIGNK 712

Query: 696 TNEITVTNKAENARLTAIQQEQQSESGVNQDEELSNMIKNQTAYQAAAKIIQAASDMLNV 755
           TNEI VTN AE ARLTAIQ +QQSESGVNQDEEL++MI+NQ  YQAAAKIIQAASDM+NV
Sbjct: 713 TNEINVTNTAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQAASDMINV 772

Query: 756 LFTLG 760
           L +LG
Sbjct: 773 LLSLG 777


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.124    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,926,283
Number of extensions: 77124
Number of successful extensions: 255
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 1
Length of query: 761
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 668
Effective length of database: 1,179,515
Effective search space: 787916020
Effective search space used: 787916020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 134 (56.2 bits)