BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0033.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311359|ref|YP_003775451.1| flagellar hook-filament junctio...   464   e-132

>gi|300311359|ref|YP_003775451.1| flagellar hook-filament junction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score =  464 bits (1193), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/377 (63%), Positives = 284/377 (75%)

Query: 1   MRISTSMLYQLSNTELTSMQGSILKLNQQVTQQQTVLLPSDDAVAAARALDLSQTQALND 60
           MRIST M+YQ SN +LTSMQ   LKL+QQVT QQ VLLPSDD VAAARALD+ QT  LN+
Sbjct: 1   MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60

Query: 61  QYKINRNNADSSLSQVNAALTNVTAMLTKIKSNITQAGNAAFSNNERANMATELKGNLKE 120
           QYK NR NA+S+LS V   L ++T MLTK+KSN+  AGNA++SN ER NMA+E+KGNL E
Sbjct: 61  QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120

Query: 121 MLGFANATDALGNYLFSGFKATTQPFDYDSMGNIVYNGDQGQQSLQVDSTRNMETSVSGQ 180
           +LG+ANA D  GNYLF+GFK+TTQPF  D  G +VYNGDQG  SLQVDSTR M+ S SGQ
Sbjct: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISASGQ 180

Query: 181 AVFQGAGQDTFKNMQDLITLLQVPVTEAANNADTQAANTYEYPAGSGQFPIQAYKTAQAA 240
           A+FQG GQD FK M + I +L VPVTEAAN AD  AAN + YPAGSG  PI AYKT+ A 
Sbjct: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSLAQ 240

Query: 241 VDAALPTDPNYGTMLTQAANAKLLSDKADAARTPIPGSQAALTRGLNKLGAAIDLQMNSV 300
           ++A  PTDP Y  + T  A  KL SD ADAARTP+ GSQAALTR L      ID  +++V
Sbjct: 241 LNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLLSNV 300

Query: 301 GAATASVGARQAEIDNLNATGDVLKEQYTQSVNDLLGRNPSDLAANISALSLQQTYLQAA 360
             A AS+GARQ E+DNL+A G+V KE YTQ++N+LLGRNPSD+   IS  +L QTYL AA
Sbjct: 301 TTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLSAA 360

Query: 361 QKSFVTTSSLTLLNYLK 377
           QK FVTTS L+LLNYLK
Sbjct: 361 QKVFVTTSGLSLLNYLK 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.122    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 851,245
Number of extensions: 30253
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)