BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0026.p
         (173 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311369|ref|YP_003775461.1| flagellar transmembrane protein...   268   1e-73

>gi|300311369|ref|YP_003775461.1| flagellar transmembrane protein
           FliL [Herbaspirillum seropedicae SmR1]
          Length = 171

 Score =  268 bits (686), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 138/174 (79%), Positives = 155/174 (89%), Gaps = 4/174 (2%)

Query: 1   MATKAAKPAAKGADAAEAAPAKS-KKMLFIIIGAVLVLAIGGGAAFMLMGGKSKKADEEH 59
           MATK   PA KGA+A +AAPAKS KKMLFII+GAVLVL IGG AAF +MGGK KK  E+H
Sbjct: 1   MATKGKAPA-KGAEA-DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKG-EDH 57

Query: 60  AEEKSSSKVPVFVVIEPFVVNLQQETGDQFLQVALTLQVPNAETAESIKVFMPQVRSRLL 119
           AEEK+ +K P FVVIEPFVVNLQQE+GDQ+LQVA+TLQVP+ +TAE++K++MPQVRSRLL
Sbjct: 58  AEEKAEAKAPTFVVIEPFVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLL 117

Query: 120 MVLSSKKASELLTSEGKRNLTDEIIDQLGEPFAGGGKGPSITDVFYTSFVIQQQ 173
           MVLSSKKASELLTSEGKR LTDEIIDQLGEPF+G GKGP ITDVFYTSFVIQQQ
Sbjct: 118 MVLSSKKASELLTSEGKRRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQQQ 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 304,702
Number of extensions: 8249
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,245,805
Effective search space: 117105670
Effective search space used: 117105670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)