BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0025.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311370|ref|YP_003775462.1| flagellar hook-length control p...   254   7e-69

>gi|300311370|ref|YP_003775462.1| flagellar hook-length control
           protein [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  254 bits (650), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 253/448 (56%), Gaps = 45/448 (10%)

Query: 1   MKTQLPILNV---ANLQNSARPATQADSFTADVPFNQVLNKEVSNRNAENQSKPNEAAKD 57
           M T LP+LNV   +     AR A  ADSF+ADVPFNQVLN +VS RN +N S+    A  
Sbjct: 1   MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQDKPQAAQ 60

Query: 58  TSPEPVKAAPAPAASTAPKSDADKAASSDDKKADDQAEDDASAATDAASAQQMLALVANM 117
                  + P  +AS+A  S A+ +    D   D+  + D +A   +A   ++LALVAN+
Sbjct: 61  EQQPAAPSQPTQSASSAKASAANGSEQKQDSAKDEDKDSDDTATQASA---ELLALVANI 117

Query: 118 GQMIVQPLS---KKTTDQDMDALAGQKGKKPIGQIGADAKMDLPLADAQGEDKGKAKNNP 174
            Q  V+P++    + TD D+ A A + G              L LAD Q    G  K+  
Sbjct: 118 AQNAVKPVTDGKSEHTDADLLAQAKRGGAS------------LSLADEQQALAGDGKDGK 165

Query: 175 LDLAALQDS---EKDAADGKSALPTRATT---------EKSQAESP---VSAKSFQADLQ 219
           +DLA LQ S    K   DG +A   R              ++ E P   + ++  QA  +
Sbjct: 166 IDLAGLQSSLAANKGKQDGAAADLARKANAAEANPTDAHAAKGEKPAVDLGSEKAQALSK 225

Query: 220 ESATA----ARNAKVTPE-VNVKPIETPVQPTAATVIPALQQAMSLSQ-QAAMSGQAVQR 273
           E A+     A+  K T E V     E P       V+PA+QQA++ +Q QA        +
Sbjct: 226 EDASTLANRAQYGKATTETVATAKQELPQATPTPVVMPAMQQALAANQTQAVFGTTYTDK 285

Query: 274 LTPAVGSQGWDQAVGQKVLWMANGGLQSASLTLNPPDLGPLQVVLHVNNQQADATFITAQ 333
           + P VGS GWDQAVG K+ WMA GG+QSASLTLNPPDLGP+QVVL+V+NQQADATFITAQ
Sbjct: 286 IQPNVGSAGWDQAVGNKITWMATGGIQSASLTLNPPDLGPMQVVLNVHNQQADATFITAQ 345

Query: 334 PEVKQALEAAMPKLREMMDQAGIQLGQATVNTGTP-NQQQGANQQQQARSSSGDMSNFGG 392
           PEVKQALEAAMPKLREMMDQAGIQLGQATVNTG P  QQ     QQQARSSSG  +   G
Sbjct: 346 PEVKQALEAAMPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSSSG--AGGAG 403

Query: 393 RDNEPDVNVAVVPRPIARGGQGLVDTFA 420
           ++ + ++ +          G GLVDTFA
Sbjct: 404 QEQDGEIAITGAATATTTSGLGLVDTFA 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.306    0.120    0.324 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 955,786
Number of extensions: 31711
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 132 (55.5 bits)