BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0020.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059...   501   e-143

>gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059
           [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score =  501 bits (1291), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/304 (83%), Positives = 284/304 (93%), Gaps = 1/304 (0%)

Query: 8   EPPRNGVVRYAQSPQGRRVLLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIV 67
           +P +NG++ YA+SPQG+R+LL++AAAA +A+M GIW+WSQK EYRVLFSNF+DRDGGAIV
Sbjct: 5   QPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIV 64

Query: 68  ASLQQMNVPYKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFL 127
           ASLQQMNVPYKYS+GG+AILVPE MVHDARLKLA+QGLPKGGNVGFELMENQKLG+SQFL
Sbjct: 65  ASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFL 124

Query: 128 EQVNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLD 187
           EQVNFQRALEGELARS+ SL++VQ AR+HLALPKASVFVRDQQKPTASV+LSLYPGR LD
Sbjct: 125 EQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLD 184

Query: 188 AQQVSAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQP-ANGLDPTQLKYVQDLQQDI 246
            QQVSAIVHLVASSVPELSPK+VTIVDQNGNLLSDTTKQ   N LDPTQLKYVQD+QQDI
Sbjct: 185 PQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDI 244

Query: 247 IKRVESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGN 306
           +KRVESIIAPIVG GNVRAEATADVDFSRSEQA+E YKPNQT D+AAVRSKQSSE+ + +
Sbjct: 245 VKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSAS 304

Query: 307 SSTS 310
           + TS
Sbjct: 305 NGTS 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 903,133
Number of extensions: 32283
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)