BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0017.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311378|ref|YP_003775470.1| ype IV pilus assembly protein P...   322   1e-89

>gi|300311378|ref|YP_003775470.1| ype IV pilus assembly protein PilZ
           [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  322 bits (825), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 147/206 (71%), Positives = 182/206 (88%)

Query: 1   MMERNQLLSLLIKGGSESIITSILDIDEDQNSVVIDAAPSASLNLSILQSNRIGFEALYN 60
           MME+NQLLSL+IKGGSES+ITSIL++D D++++ +DAAPSA LN SI+ S +I FEA+YN
Sbjct: 28  MMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPSAMLNESIVSSKQIDFEAIYN 87

Query: 61  NIRITFNVDKAKHCEFQSRPALKIDIPESLVRLQRREYFRIPTPIAKPLRCTFRVTQEDG 120
           +IRITF V+ A+  E+Q RPAL++DIPESLVRLQRRE+FRIPTPIAKPLRCTFR+TQ DG
Sbjct: 88  SIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFRIPTPIAKPLRCTFRITQSDG 147

Query: 121 SFTTIVTLLNNISAGGVGLTDEKKILDTTVGRVYEDVSLEMTDNTIVTVKLVVRDCKEAK 180
           SF T+VT+LNNISAGGVG+TDEKK+L TT G +YED  LE+ DNT+V+VKL VRDCKE K
Sbjct: 148 SFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLELGDNTLVSVKLQVRDCKEFK 207

Query: 181 LTSGKTVNRFGCEFVDLPRAVLAAVQ 206
           +T+GK VNRFGC+F+D+PR VLAA+Q
Sbjct: 208 MTNGKIVNRFGCQFIDIPRTVLAAIQ 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 607,176
Number of extensions: 21326
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)