BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0015.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311380|ref|YP_003775472.1| hypothetical protein Hsero_2064...   386   e-108

>gi|300311380|ref|YP_003775472.1| hypothetical protein Hsero_2064
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  386 bits (991), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/349 (56%), Positives = 258/349 (73%), Gaps = 12/349 (3%)

Query: 46  LQAKVLSTYNDGTYLVRIANTAARMVLPTSTRTGDTLQLTMVGKDPRPTFLLTESSRRED 105
           +  ++LS ++DGT+LVRIANTAARMVLP + + GD L LT+V KDPRPTF + E S R D
Sbjct: 1   MSGRILSNFSDGTFLVRIANTAARMVLPNNAKVGDALVLTLVSKDPRPTFSVNEGSIRPD 60

Query: 106 DESTEVSLSTAGRAMEKDMKSLKAAQQ---GLTNVVTRDNQLDEGDAKNAAPNQL-APES 161
           +ES  V+LS AGRAM+KD+KSL+   +   G   +   ++   +  AK A P Q  AP S
Sbjct: 61  EESASVALSNAGRAMQKDLKSLQFVTRDDAGAGQIAQNEDIAADAQAKGARPGQTGAPAS 120

Query: 162 TKTSLSSAGKLVDALLHASEESDLPSAIKPGSPLVANPTSNTP--QLANALRDSVALSGA 219
           T T+LS+A +L+D+LLHAS++ D+   +   +PL+  P +  P  Q+A AL+D++A SG 
Sbjct: 121 TTTTLSNAARLIDSLLHASQQGDMADHVSAPAPLL--PRAGLPPEQMAGALKDAIAYSGV 178

Query: 220 FYESHVAEWADGKRPMTELLKEPQAQLGQQTQAAGVSSLLNTTDPANTQLGQLINLQLNA 279
           FYESHV+ WA G+RP  ELL+EPQAQ+    +  G  +LL+  DPA  QLGQ+INLQLNA
Sbjct: 179 FYESHVSAWAAGQRPAEELLREPQAQVA--AKHGGEINLLSQNDPAQNQLGQIINLQLNA 236

Query: 280 LEQQRIVWHGEVWPGQQMEWEINRDSPDQQQQNAQ-EDEFAPSWHSVVRFNFEHLGSVSA 338
           LEQQR++WHGEVWPGQ+M+WEI+++   QQ+ NAQ +DE  PSWHSVVRF+F HLG VSA
Sbjct: 237 LEQQRVLWHGEVWPGQKMDWEISQEH-GQQESNAQADDEAPPSWHSVVRFDFAHLGGVSA 295

Query: 339 SIRLIGQQIHMQVRTANDVTAAALRANGSMLSDAMEAAGSSLDSLIVKR 387
           SIRLIGQQIH+QV+  N+ TAAALR N S+ +DAM AAG+SLDSLIVK+
Sbjct: 296 SIRLIGQQIHVQVKADNESTAAALRGNSSLFADAMAAAGTSLDSLIVKQ 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.123    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,092,247
Number of extensions: 40760
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)