BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0012.p
         (96 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 pro...    70   3e-14
gi|300310454|ref|YP_003774546.1| flagellar hook-associated prote...    61   1e-11

>gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2
           protein [Herbaspirillum seropedicae SmR1]
          Length = 690

 Score = 70.1 bits (170), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 38/48 (79%)

Query: 1   LVDGFLADGGIIDTKTKGLQASLKINTDRQSVINTRLSNMQDQYTNQF 48
           L+   L+D GII TKT GLQASLKIN DRQ+ + +RLSN++D YTNQF
Sbjct: 614 LMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTNQF 661


>gi|300310454|ref|YP_003774546.1| flagellar hook-associated protein
           2 [Herbaspirillum seropedicae SmR1]
          Length = 676

 Score = 61.2 bits (147), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 37/48 (77%)

Query: 1   LVDGFLADGGIIDTKTKGLQASLKINTDRQSVINTRLSNMQDQYTNQF 48
           L+DG L + G++ +KTKGLQ SLKI TD+Q+  N RL +++D YTNQF
Sbjct: 601 LMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQF 648


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 222,025
Number of extensions: 5391
Number of successful extensions: 14
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 1,619,870
Length adjustment: 65
Effective length of query: 31
Effective length of database: 1,312,095
Effective search space: 40674945
Effective search space used: 40674945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 123 (52.0 bits)