BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0102.0006.p (395 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 535 e-153 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 197 1e-51 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 172 3e-44 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 131 1e-31 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 535 bits (1378), Expect = e-153, Method: Compositional matrix adjust. Identities = 259/392 (66%), Positives = 308/392 (78%), Gaps = 1/392 (0%) Query: 1 MLKDALECHKTSLLLDPTDIYAQNKIADTYIKQKDYDKAHEHYQRVIELAPKDPNSYAKL 60 M K+A+E HKT++LLDP D YA NKIAD+Y+K D+AHEH RVIE+APKDPN+Y KL Sbjct: 209 MYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNAYVKL 268 Query: 61 ASSLFSTQDRYEDAMALFRKALEVDPKHPLTLNNIGATMYDYGETVSSLQFFHDALALKP 120 SS FST DR++DAM +F KALEVD KH LT NNIGA +D+G+ ++ F AL L+P Sbjct: 269 GSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALELRP 328 Query: 121 NYLTAQHNLALGQLLAGDLKEGWANHESRLEVKERSYVYKLIHKLFGMIPKWDGKSSLKG 180 NY TA+HN+AL LL G LKEGW HESRL +ERS+VY+LIHKLF +IPKWDGKSSL G Sbjct: 329 NYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDGKSSLAG 388 Query: 181 KYILLMHEQGFGDSIQFVRYVHLLLAQGARVALHVKDPLARLFRSVSDQVTLVRETDPLP 240 KYILLMHEQGFGDSIQF+RYV ++L QGARVALHVK+PL RLF+S S +VTLVRE+DPLP Sbjct: 389 KYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSPEVTLVRESDPLP 448 Query: 241 KCDCAYVLMSLPHALGTDSVEDIPSYP-YYLSADPQDIKTWKEKIDMLAGNTSDLRVGFV 299 CDCAYVLMSLP+A+GTD+V+DIPS P YLSADP +W EKI L+ + LRVG V Sbjct: 449 PCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLSQSPEKLRVGVV 508 Query: 300 WAGNPEHGNDRKRSIPLDIFAPLFNTPGVQFFSIQKGLATPELAKLPKELPVYNIGDSFN 359 W GNPEHGNDR RSI +D FA LF P ++F+S+QKG LP LP++N+GD Sbjct: 509 WGGNPEHGNDRHRSIAMDKFATLFQLPNIEFYSLQKGKPLDAFKALPPGLPIFNLGDDCQ 568 Query: 360 DFADTAAAMANLDLIISVDTSVVHLAGALGRP 391 DFADTAAA+ANLDL++SVDTSVVHLAGALG P Sbjct: 569 DFADTAAAIANLDLVVSVDTSVVHLAGALGHP 600 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 197 bits (502), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 147/401 (36%), Positives = 200/401 (49%), Gaps = 25/401 (6%) Query: 4 DALECHKTSLLLDPTDIYAQNKIADTYIKQKDYDKAHEHYQRVIELAPKDPNSYAKLASS 63 DA E ++ ++ L P I A + +T D+A Y R +E+ P + + Sbjct: 162 DARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYV 221 Query: 64 LFSTQDRYEDAMALFRKALEVDPKHPLTLNNIGATMYDYGETVSSLQFFHDALALKPNYL 123 LF Q R +A+ + +AL +D + P N G+T+ + + + A ALKP+ Sbjct: 222 LFKMQ-RPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAG 280 Query: 124 TAQHNLALGQLLAGDLKEGWANHESRLEVKERSYVYKLIHKLFGMIPKWDGKSSLKGKYI 183 +A N AL QL GD GW E+R ++ + M P W G+ L+GK I Sbjct: 281 SATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQF-----MQPLWLGEQPLEGKTI 335 Query: 184 LLMHEQGFGDSIQFVRYVHLLLAQGARVALHVKDPLARLFRSVSDQVTLVRETDPL--PK 241 LL EQGFGD++QFVRY LL A+GARV L V+ L R + VT V TD P Sbjct: 336 LLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLAGLPG-VTQVIGTDHFMRPP 394 Query: 242 CDCAYVLMSLPHALGTDSVEDIPSYPYYLSADPQDIKTWKEKIDMLAGNTSDLRVGFVWA 301 D LMSLP A T S DIP PY L + +W L N + LRVG VWA Sbjct: 395 FDFHCPLMSLPLACKTFSEADIPRAPYLLP----EASSWAAWHQRLPRNRA-LRVGLVWA 449 Query: 302 GNPEHGN------DRKRSIPLDIFAPLFNT----PGVQFFSIQKGL-ATPELAKLPKELP 350 G+ + D +RS+P APL ++F+S+Q G A +L P Sbjct: 450 GSSAQTHPDAVRIDGERSLPFATLAPLVELAREHAALEFYSLQVGQDAVAQLHAHPLASL 509 Query: 351 VYNIGDSFNDFADTAAAMANLDLIISVDTSVVHLAGALGRP 391 V + +DFA+T A +ANLDL+I+VDTSV HLAGALGRP Sbjct: 510 VRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRP 550 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 172 bits (437), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 133/380 (35%), Positives = 198/380 (52%), Gaps = 14/380 (3%) Query: 5 ALECHKTSLLLDPTDIYAQNKIADTYIKQKDYDKAHEHYQRVIELAPKDPNSYAKLASSL 64 AL + +L DP ++ A + + + +D A + + + L D + LA+ L Sbjct: 132 ALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRL--DDQRAQYWLAAGL 189 Query: 65 FS-TQDRYEDAMALFRKALEVDPKHPLTLNNIGATMYDYGETVSSLQFFHDALALKPNYL 123 Q ++E+A+ + +AL + P+ + G T+ + ++ + AL + Sbjct: 190 VEHAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDA 249 Query: 124 TAQHNLALGQLLAGDLKEGWANHESRLEVKERSYVYKLIHKLFGMIPKWDGKSSLKGKYI 183 A NLAL L+ G L++ W +E R E + + Y+ IP W+G SSL GK I Sbjct: 250 DAHLNLALSLLVLGRLEQAWPLYEWRWEGRS-ADPYR-----HATIPAWNGGSSLAGKRI 303 Query: 184 LLMHEQGFGDSIQFVRYVHLLLAQGARVALHVKDPLARLFRS--VSDQVTLVRETDPLPK 241 LL EQG GD+IQF RYV L+L GA+V L V L L S V +TLV +PLP+ Sbjct: 304 LLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLPE 363 Query: 242 CDCAYVLMSLPHALGTDSVEDIPSYPYYLSADPQDIKTWKEKIDMLAGNT-SDLRVGFVW 300 D LMSLP T + +DIP+ YL ADP W+E++ LA + + +R+G V Sbjct: 364 VDFQLPLMSLPLVCNTRA-DDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVC 422 Query: 301 AGNPEHGNDRKRSIPLDIFAPL-FNTPGVQFFSIQKGLATPELAKLPKELPVYNIGDSFN 359 +GN + ND +RSI L FAPL P + FF IQ L + ++ + +G + N Sbjct: 423 SGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAAIN 482 Query: 360 DFADTAAAMANLDLIISVDT 379 DFADTAA +A +DL+ISVDT Sbjct: 483 DFADTAAVLAGMDLVISVDT 502 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 148/328 (45%), Gaps = 17/328 (5%) Query: 69 DRYEDAMALFRKALEVDPKHPLTLNNIGATMYDYGETVSSLQFFHDALALKPNYLTAQHN 128 +R+E+A+ + A + D L N+ + G + F AL P++ A+ Sbjct: 157 NRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVG 216 Query: 129 LALGQLLAGDLKEGWANHESRLEVKERSYVYKLIHKLFGMIPKWDGKSSLKGKYILLMHE 188 A L EGW HE+R + E + + P+W ++GK +LL E Sbjct: 217 RAHMLLSQQHYAEGWRAHEARFGIAELAR-----RGIDSPRPRWRAGEPVRGKRVLLWAE 271 Query: 189 QGFGDSIQFVRYVHLLLAQGARVALHVKDPLARLFRSVSDQVTLVRETDPLPKCDC-AYV 247 QG GD++QF RY+ L+ Q A V+L L + QV + P D A + Sbjct: 272 QGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLPQVRCMANPGEAPDHDLHASL 331 Query: 248 LMSLPHALGTDSVEDIPSYPYYLSADPQDIKTWKEKIDML-AGNTSDLRVGFVWAGNPEH 306 L D + PS YL+A PQ ++ W+ + L R+G WAG Sbjct: 332 LSLPLLLGLPDPRQGPPS--PYLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQYA 389 Query: 307 GNDRKRSIPLDIFAPLFNTPGVQFFSIQKGLATPEL---AKLPKELPVYNIGDSFNDFAD 363 R IPLD APL+ P F S+Q + + A L + L + D+AD Sbjct: 390 TVHHSRDIPLDALAPLWTLPA-DFVSLQVEVPAGDQAAHATLAQRLHT----PTLVDWAD 444 Query: 364 TAAAMANLDLIISVDTSVVHLAGALGRP 391 TAA + LDL+ISVDT+VVHLAGALG P Sbjct: 445 TAALLCALDLVISVDTAVVHLAGALGVP 472 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,220,236 Number of extensions: 50790 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 4 Length of query: 395 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 308 Effective length of database: 1,207,925 Effective search space: 372040900 Effective search space used: 372040900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)